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Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of 2094 bp. The combined transcriptome was assessed f...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7155000/ https://www.ncbi.nlm.nih.gov/pubmed/32309524 http://dx.doi.org/10.1016/j.dib.2020.105416 |
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author | Shafi, K. Mohamed Joshi, Adwait G. Meenakshi, Iyer Pasha, Shaik Naseer Harini, K. Mahita, Jarjapu Sajeevan, Radha Sivarajan Karpe, Snehal D. Ghosh, Pritha Nitish, Sathyanarayanan Gandhimathi, A. Mathew, Oommen K. Prasanna, Subramanian Hari Malini, Manoharan Mutt, Eshita Naika, Mahantesha Ravooru, Nithin Rao, Rajas M. Shingate, Prashant N. Sukhwal, Anshul Sunitha, Margaret S. Upadhyay, Atul K. Vinekar, Rithvik S. Sowdhamini, Ramanathan |
author_facet | Shafi, K. Mohamed Joshi, Adwait G. Meenakshi, Iyer Pasha, Shaik Naseer Harini, K. Mahita, Jarjapu Sajeevan, Radha Sivarajan Karpe, Snehal D. Ghosh, Pritha Nitish, Sathyanarayanan Gandhimathi, A. Mathew, Oommen K. Prasanna, Subramanian Hari Malini, Manoharan Mutt, Eshita Naika, Mahantesha Ravooru, Nithin Rao, Rajas M. Shingate, Prashant N. Sukhwal, Anshul Sunitha, Margaret S. Upadhyay, Atul K. Vinekar, Rithvik S. Sowdhamini, Ramanathan |
author_sort | Shafi, K. Mohamed |
collection | PubMed |
description | In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of 2094 bp. The combined transcriptome was assessed for transcript abundance across five tissues. The protein coding genes identified from the transcripts were annotated and used for orthology analysis. Further, enzymes involved in the biosynthesis of select medicinally important secondary metabolites, vitamins and ion transporters were identified and their expression levels across tissues were examined. The data generated by RNA sequencing has been deposited to NCBI public repository under the accession number PRJNA394193 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA394193). |
format | Online Article Text |
id | pubmed-7155000 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-71550002020-04-17 Dataset for the combined transcriptome assembly of M. oleifera and functional annotation Shafi, K. Mohamed Joshi, Adwait G. Meenakshi, Iyer Pasha, Shaik Naseer Harini, K. Mahita, Jarjapu Sajeevan, Radha Sivarajan Karpe, Snehal D. Ghosh, Pritha Nitish, Sathyanarayanan Gandhimathi, A. Mathew, Oommen K. Prasanna, Subramanian Hari Malini, Manoharan Mutt, Eshita Naika, Mahantesha Ravooru, Nithin Rao, Rajas M. Shingate, Prashant N. Sukhwal, Anshul Sunitha, Margaret S. Upadhyay, Atul K. Vinekar, Rithvik S. Sowdhamini, Ramanathan Data Brief Agricultural and Biological Science In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of 2094 bp. The combined transcriptome was assessed for transcript abundance across five tissues. The protein coding genes identified from the transcripts were annotated and used for orthology analysis. Further, enzymes involved in the biosynthesis of select medicinally important secondary metabolites, vitamins and ion transporters were identified and their expression levels across tissues were examined. The data generated by RNA sequencing has been deposited to NCBI public repository under the accession number PRJNA394193 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA394193). Elsevier 2020-03-20 /pmc/articles/PMC7155000/ /pubmed/32309524 http://dx.doi.org/10.1016/j.dib.2020.105416 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Shafi, K. Mohamed Joshi, Adwait G. Meenakshi, Iyer Pasha, Shaik Naseer Harini, K. Mahita, Jarjapu Sajeevan, Radha Sivarajan Karpe, Snehal D. Ghosh, Pritha Nitish, Sathyanarayanan Gandhimathi, A. Mathew, Oommen K. Prasanna, Subramanian Hari Malini, Manoharan Mutt, Eshita Naika, Mahantesha Ravooru, Nithin Rao, Rajas M. Shingate, Prashant N. Sukhwal, Anshul Sunitha, Margaret S. Upadhyay, Atul K. Vinekar, Rithvik S. Sowdhamini, Ramanathan Dataset for the combined transcriptome assembly of M. oleifera and functional annotation |
title | Dataset for the combined transcriptome assembly of M. oleifera and functional annotation |
title_full | Dataset for the combined transcriptome assembly of M. oleifera and functional annotation |
title_fullStr | Dataset for the combined transcriptome assembly of M. oleifera and functional annotation |
title_full_unstemmed | Dataset for the combined transcriptome assembly of M. oleifera and functional annotation |
title_short | Dataset for the combined transcriptome assembly of M. oleifera and functional annotation |
title_sort | dataset for the combined transcriptome assembly of m. oleifera and functional annotation |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7155000/ https://www.ncbi.nlm.nih.gov/pubmed/32309524 http://dx.doi.org/10.1016/j.dib.2020.105416 |
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