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Dataset for the combined transcriptome assembly of M. oleifera and functional annotation

In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of 2094 bp. The combined transcriptome was assessed f...

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Autores principales: Shafi, K. Mohamed, Joshi, Adwait G., Meenakshi, Iyer, Pasha, Shaik Naseer, Harini, K., Mahita, Jarjapu, Sajeevan, Radha Sivarajan, Karpe, Snehal D., Ghosh, Pritha, Nitish, Sathyanarayanan, Gandhimathi, A., Mathew, Oommen K., Prasanna, Subramanian Hari, Malini, Manoharan, Mutt, Eshita, Naika, Mahantesha, Ravooru, Nithin, Rao, Rajas M., Shingate, Prashant N., Sukhwal, Anshul, Sunitha, Margaret S., Upadhyay, Atul K., Vinekar, Rithvik S., Sowdhamini, Ramanathan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7155000/
https://www.ncbi.nlm.nih.gov/pubmed/32309524
http://dx.doi.org/10.1016/j.dib.2020.105416
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author Shafi, K. Mohamed
Joshi, Adwait G.
Meenakshi, Iyer
Pasha, Shaik Naseer
Harini, K.
Mahita, Jarjapu
Sajeevan, Radha Sivarajan
Karpe, Snehal D.
Ghosh, Pritha
Nitish, Sathyanarayanan
Gandhimathi, A.
Mathew, Oommen K.
Prasanna, Subramanian Hari
Malini, Manoharan
Mutt, Eshita
Naika, Mahantesha
Ravooru, Nithin
Rao, Rajas M.
Shingate, Prashant N.
Sukhwal, Anshul
Sunitha, Margaret S.
Upadhyay, Atul K.
Vinekar, Rithvik S.
Sowdhamini, Ramanathan
author_facet Shafi, K. Mohamed
Joshi, Adwait G.
Meenakshi, Iyer
Pasha, Shaik Naseer
Harini, K.
Mahita, Jarjapu
Sajeevan, Radha Sivarajan
Karpe, Snehal D.
Ghosh, Pritha
Nitish, Sathyanarayanan
Gandhimathi, A.
Mathew, Oommen K.
Prasanna, Subramanian Hari
Malini, Manoharan
Mutt, Eshita
Naika, Mahantesha
Ravooru, Nithin
Rao, Rajas M.
Shingate, Prashant N.
Sukhwal, Anshul
Sunitha, Margaret S.
Upadhyay, Atul K.
Vinekar, Rithvik S.
Sowdhamini, Ramanathan
author_sort Shafi, K. Mohamed
collection PubMed
description In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of 2094 bp. The combined transcriptome was assessed for transcript abundance across five tissues. The protein coding genes identified from the transcripts were annotated and used for orthology analysis. Further, enzymes involved in the biosynthesis of select medicinally important secondary metabolites, vitamins and ion transporters were identified and their expression levels across tissues were examined. The data generated by RNA sequencing has been deposited to NCBI public repository under the accession number PRJNA394193 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA394193).
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spelling pubmed-71550002020-04-17 Dataset for the combined transcriptome assembly of M. oleifera and functional annotation Shafi, K. Mohamed Joshi, Adwait G. Meenakshi, Iyer Pasha, Shaik Naseer Harini, K. Mahita, Jarjapu Sajeevan, Radha Sivarajan Karpe, Snehal D. Ghosh, Pritha Nitish, Sathyanarayanan Gandhimathi, A. Mathew, Oommen K. Prasanna, Subramanian Hari Malini, Manoharan Mutt, Eshita Naika, Mahantesha Ravooru, Nithin Rao, Rajas M. Shingate, Prashant N. Sukhwal, Anshul Sunitha, Margaret S. Upadhyay, Atul K. Vinekar, Rithvik S. Sowdhamini, Ramanathan Data Brief Agricultural and Biological Science In this paper, we present the data acquired during transcriptome analysis of the plant Moringa oleifera [1] from five different tissues (root, stem, leaf, flower and seed) by RNA sequencing. A total of 271 million reads were assembled with an N50 of 2094 bp. The combined transcriptome was assessed for transcript abundance across five tissues. The protein coding genes identified from the transcripts were annotated and used for orthology analysis. Further, enzymes involved in the biosynthesis of select medicinally important secondary metabolites, vitamins and ion transporters were identified and their expression levels across tissues were examined. The data generated by RNA sequencing has been deposited to NCBI public repository under the accession number PRJNA394193 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA394193). Elsevier 2020-03-20 /pmc/articles/PMC7155000/ /pubmed/32309524 http://dx.doi.org/10.1016/j.dib.2020.105416 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Shafi, K. Mohamed
Joshi, Adwait G.
Meenakshi, Iyer
Pasha, Shaik Naseer
Harini, K.
Mahita, Jarjapu
Sajeevan, Radha Sivarajan
Karpe, Snehal D.
Ghosh, Pritha
Nitish, Sathyanarayanan
Gandhimathi, A.
Mathew, Oommen K.
Prasanna, Subramanian Hari
Malini, Manoharan
Mutt, Eshita
Naika, Mahantesha
Ravooru, Nithin
Rao, Rajas M.
Shingate, Prashant N.
Sukhwal, Anshul
Sunitha, Margaret S.
Upadhyay, Atul K.
Vinekar, Rithvik S.
Sowdhamini, Ramanathan
Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
title Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
title_full Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
title_fullStr Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
title_full_unstemmed Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
title_short Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
title_sort dataset for the combined transcriptome assembly of m. oleifera and functional annotation
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7155000/
https://www.ncbi.nlm.nih.gov/pubmed/32309524
http://dx.doi.org/10.1016/j.dib.2020.105416
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