Cargando…

Quantifying the incremental value of deep learning: Application to lung nodule detection

We present a case study for implementing a machine learning algorithm with an incremental value framework in the domain of lung cancer research. Machine learning methods have often been shown to be competitive with prediction models in some domains; however, implementation of these methods is in ear...

Descripción completa

Detalles Bibliográficos
Autores principales: Warsavage, Theodore, Xing, Fuyong, Barón, Anna E., Feser, William J., Hirsch, Erin, Miller, York E., Malkoski, Stephen, Wolf, Holly J., Wilson, David O., Ghosh, Debashis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7156089/
https://www.ncbi.nlm.nih.gov/pubmed/32287288
http://dx.doi.org/10.1371/journal.pone.0231468
_version_ 1783522149089148928
author Warsavage, Theodore
Xing, Fuyong
Barón, Anna E.
Feser, William J.
Hirsch, Erin
Miller, York E.
Malkoski, Stephen
Wolf, Holly J.
Wilson, David O.
Ghosh, Debashis
author_facet Warsavage, Theodore
Xing, Fuyong
Barón, Anna E.
Feser, William J.
Hirsch, Erin
Miller, York E.
Malkoski, Stephen
Wolf, Holly J.
Wilson, David O.
Ghosh, Debashis
author_sort Warsavage, Theodore
collection PubMed
description We present a case study for implementing a machine learning algorithm with an incremental value framework in the domain of lung cancer research. Machine learning methods have often been shown to be competitive with prediction models in some domains; however, implementation of these methods is in early development. Often these methods are only directly compared to existing methods; here we present a framework for assessing the value of a machine learning model by assessing the incremental value. We developed a machine learning model to identify and classify lung nodules and assessed the incremental value added to existing risk prediction models. Multiple external datasets were used for validation. We found that our image model, trained on a dataset from The Cancer Imaging Archive (TCIA), improves upon existing models that are restricted to patient characteristics, but it was inconclusive about whether it improves on models that consider nodule features. Another interesting finding is the variable performance on different datasets, suggesting population generalization with machine learning models may be more challenging than is often considered.
format Online
Article
Text
id pubmed-7156089
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-71560892020-04-16 Quantifying the incremental value of deep learning: Application to lung nodule detection Warsavage, Theodore Xing, Fuyong Barón, Anna E. Feser, William J. Hirsch, Erin Miller, York E. Malkoski, Stephen Wolf, Holly J. Wilson, David O. Ghosh, Debashis PLoS One Research Article We present a case study for implementing a machine learning algorithm with an incremental value framework in the domain of lung cancer research. Machine learning methods have often been shown to be competitive with prediction models in some domains; however, implementation of these methods is in early development. Often these methods are only directly compared to existing methods; here we present a framework for assessing the value of a machine learning model by assessing the incremental value. We developed a machine learning model to identify and classify lung nodules and assessed the incremental value added to existing risk prediction models. Multiple external datasets were used for validation. We found that our image model, trained on a dataset from The Cancer Imaging Archive (TCIA), improves upon existing models that are restricted to patient characteristics, but it was inconclusive about whether it improves on models that consider nodule features. Another interesting finding is the variable performance on different datasets, suggesting population generalization with machine learning models may be more challenging than is often considered. Public Library of Science 2020-04-14 /pmc/articles/PMC7156089/ /pubmed/32287288 http://dx.doi.org/10.1371/journal.pone.0231468 Text en © 2020 Warsavage et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Warsavage, Theodore
Xing, Fuyong
Barón, Anna E.
Feser, William J.
Hirsch, Erin
Miller, York E.
Malkoski, Stephen
Wolf, Holly J.
Wilson, David O.
Ghosh, Debashis
Quantifying the incremental value of deep learning: Application to lung nodule detection
title Quantifying the incremental value of deep learning: Application to lung nodule detection
title_full Quantifying the incremental value of deep learning: Application to lung nodule detection
title_fullStr Quantifying the incremental value of deep learning: Application to lung nodule detection
title_full_unstemmed Quantifying the incremental value of deep learning: Application to lung nodule detection
title_short Quantifying the incremental value of deep learning: Application to lung nodule detection
title_sort quantifying the incremental value of deep learning: application to lung nodule detection
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7156089/
https://www.ncbi.nlm.nih.gov/pubmed/32287288
http://dx.doi.org/10.1371/journal.pone.0231468
work_keys_str_mv AT warsavagetheodore quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT xingfuyong quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT baronannae quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT feserwilliamj quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT hirscherin quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT milleryorke quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT malkoskistephen quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT wolfhollyj quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT wilsondavido quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection
AT ghoshdebashis quantifyingtheincrementalvalueofdeeplearningapplicationtolungnoduledetection