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Quantifying the incremental value of deep learning: Application to lung nodule detection
We present a case study for implementing a machine learning algorithm with an incremental value framework in the domain of lung cancer research. Machine learning methods have often been shown to be competitive with prediction models in some domains; however, implementation of these methods is in ear...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7156089/ https://www.ncbi.nlm.nih.gov/pubmed/32287288 http://dx.doi.org/10.1371/journal.pone.0231468 |
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author | Warsavage, Theodore Xing, Fuyong Barón, Anna E. Feser, William J. Hirsch, Erin Miller, York E. Malkoski, Stephen Wolf, Holly J. Wilson, David O. Ghosh, Debashis |
author_facet | Warsavage, Theodore Xing, Fuyong Barón, Anna E. Feser, William J. Hirsch, Erin Miller, York E. Malkoski, Stephen Wolf, Holly J. Wilson, David O. Ghosh, Debashis |
author_sort | Warsavage, Theodore |
collection | PubMed |
description | We present a case study for implementing a machine learning algorithm with an incremental value framework in the domain of lung cancer research. Machine learning methods have often been shown to be competitive with prediction models in some domains; however, implementation of these methods is in early development. Often these methods are only directly compared to existing methods; here we present a framework for assessing the value of a machine learning model by assessing the incremental value. We developed a machine learning model to identify and classify lung nodules and assessed the incremental value added to existing risk prediction models. Multiple external datasets were used for validation. We found that our image model, trained on a dataset from The Cancer Imaging Archive (TCIA), improves upon existing models that are restricted to patient characteristics, but it was inconclusive about whether it improves on models that consider nodule features. Another interesting finding is the variable performance on different datasets, suggesting population generalization with machine learning models may be more challenging than is often considered. |
format | Online Article Text |
id | pubmed-7156089 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-71560892020-04-16 Quantifying the incremental value of deep learning: Application to lung nodule detection Warsavage, Theodore Xing, Fuyong Barón, Anna E. Feser, William J. Hirsch, Erin Miller, York E. Malkoski, Stephen Wolf, Holly J. Wilson, David O. Ghosh, Debashis PLoS One Research Article We present a case study for implementing a machine learning algorithm with an incremental value framework in the domain of lung cancer research. Machine learning methods have often been shown to be competitive with prediction models in some domains; however, implementation of these methods is in early development. Often these methods are only directly compared to existing methods; here we present a framework for assessing the value of a machine learning model by assessing the incremental value. We developed a machine learning model to identify and classify lung nodules and assessed the incremental value added to existing risk prediction models. Multiple external datasets were used for validation. We found that our image model, trained on a dataset from The Cancer Imaging Archive (TCIA), improves upon existing models that are restricted to patient characteristics, but it was inconclusive about whether it improves on models that consider nodule features. Another interesting finding is the variable performance on different datasets, suggesting population generalization with machine learning models may be more challenging than is often considered. Public Library of Science 2020-04-14 /pmc/articles/PMC7156089/ /pubmed/32287288 http://dx.doi.org/10.1371/journal.pone.0231468 Text en © 2020 Warsavage et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Warsavage, Theodore Xing, Fuyong Barón, Anna E. Feser, William J. Hirsch, Erin Miller, York E. Malkoski, Stephen Wolf, Holly J. Wilson, David O. Ghosh, Debashis Quantifying the incremental value of deep learning: Application to lung nodule detection |
title | Quantifying the incremental value of deep learning: Application to lung nodule detection |
title_full | Quantifying the incremental value of deep learning: Application to lung nodule detection |
title_fullStr | Quantifying the incremental value of deep learning: Application to lung nodule detection |
title_full_unstemmed | Quantifying the incremental value of deep learning: Application to lung nodule detection |
title_short | Quantifying the incremental value of deep learning: Application to lung nodule detection |
title_sort | quantifying the incremental value of deep learning: application to lung nodule detection |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7156089/ https://www.ncbi.nlm.nih.gov/pubmed/32287288 http://dx.doi.org/10.1371/journal.pone.0231468 |
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