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Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape

OBJECTIVE: To investigate the expression patterns and prognostic characteristics of inflammasome-related genes (IRGs) across cancer types and develop a robust biomarker for the prognosis of KIRC. METHODS: The differentially expressed IRGs and prognostic genes among 10 cancers were analyzed based on...

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Autores principales: Zheng, Tianyu, Wang, Xindong, Yue, Peipei, Han, Tongtong, Hu, Yue, Wang, Biyao, Zhao, Baohong, Zhang, Xinwen, Yan, Xu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7157792/
https://www.ncbi.nlm.nih.gov/pubmed/32328125
http://dx.doi.org/10.1155/2020/3259795
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author Zheng, Tianyu
Wang, Xindong
Yue, Peipei
Han, Tongtong
Hu, Yue
Wang, Biyao
Zhao, Baohong
Zhang, Xinwen
Yan, Xu
author_facet Zheng, Tianyu
Wang, Xindong
Yue, Peipei
Han, Tongtong
Hu, Yue
Wang, Biyao
Zhao, Baohong
Zhang, Xinwen
Yan, Xu
author_sort Zheng, Tianyu
collection PubMed
description OBJECTIVE: To investigate the expression patterns and prognostic characteristics of inflammasome-related genes (IRGs) across cancer types and develop a robust biomarker for the prognosis of KIRC. METHODS: The differentially expressed IRGs and prognostic genes among 10 cancers were analyzed based on The Cancer Genome Atlas (TCGA) dataset. Subsequently, an IRGs risk signature was developed in KIRC. Its prognostic accuracy was evaluated by receiver operating characteristic (ROC) analysis. The independent predictive capacity was identified by stratification survival and multivariate Cox analyses. The gene ontology (GO) analysis and principal component analysis (PCA) were performed to explore biological functions of the IRGs signature in KIRC. RESULTS: The expression patterns and prognostic association of IRGs varied from different cancers, while KIRC showed the most abundant survival-related dysregulated IRGs. The IRG signature for KIRC was able to independently predict survival, and the signature genes were mainly involved inimmune-related processes. CONCLUSIONS: The pan-cancer analysis provided a comprehensive landscape of IRGs across cancer types and identified a strong association between IRGs and the prognosis of KIRC. Further IRGs signature represented a reliable prognostic predictor for KIRC and verified the prognostic value of inflammasomes in KIRC, contributing to our understanding of therapies targeting inflammasomes for human cancers.
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spelling pubmed-71577922020-04-23 Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape Zheng, Tianyu Wang, Xindong Yue, Peipei Han, Tongtong Hu, Yue Wang, Biyao Zhao, Baohong Zhang, Xinwen Yan, Xu Evid Based Complement Alternat Med Research Article OBJECTIVE: To investigate the expression patterns and prognostic characteristics of inflammasome-related genes (IRGs) across cancer types and develop a robust biomarker for the prognosis of KIRC. METHODS: The differentially expressed IRGs and prognostic genes among 10 cancers were analyzed based on The Cancer Genome Atlas (TCGA) dataset. Subsequently, an IRGs risk signature was developed in KIRC. Its prognostic accuracy was evaluated by receiver operating characteristic (ROC) analysis. The independent predictive capacity was identified by stratification survival and multivariate Cox analyses. The gene ontology (GO) analysis and principal component analysis (PCA) were performed to explore biological functions of the IRGs signature in KIRC. RESULTS: The expression patterns and prognostic association of IRGs varied from different cancers, while KIRC showed the most abundant survival-related dysregulated IRGs. The IRG signature for KIRC was able to independently predict survival, and the signature genes were mainly involved inimmune-related processes. CONCLUSIONS: The pan-cancer analysis provided a comprehensive landscape of IRGs across cancer types and identified a strong association between IRGs and the prognosis of KIRC. Further IRGs signature represented a reliable prognostic predictor for KIRC and verified the prognostic value of inflammasomes in KIRC, contributing to our understanding of therapies targeting inflammasomes for human cancers. Hindawi 2020-04-03 /pmc/articles/PMC7157792/ /pubmed/32328125 http://dx.doi.org/10.1155/2020/3259795 Text en Copyright © 2020 Tianyu Zheng et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zheng, Tianyu
Wang, Xindong
Yue, Peipei
Han, Tongtong
Hu, Yue
Wang, Biyao
Zhao, Baohong
Zhang, Xinwen
Yan, Xu
Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape
title Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape
title_full Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape
title_fullStr Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape
title_full_unstemmed Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape
title_short Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape
title_sort prognostic inflammasome-related signature construction in kidney renal clear cell carcinoma based on a pan-cancer landscape
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7157792/
https://www.ncbi.nlm.nih.gov/pubmed/32328125
http://dx.doi.org/10.1155/2020/3259795
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