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Exome-Wide Association Study Reveals Several Susceptibility Genes and Pathways Associated With Acute Coronary Syndromes in Han Chinese

Genome-wide association studies have identified more than 150 susceptibility loci for coronary artery disease (CAD); however, there is still a large proportion of missing heritability remaining to be investigated. This study sought to identify population-based genetic variation associated with acute...

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Autores principales: Zheng, Qiwen, Zhang, Yan, Jiang, Jie, Jia, Jia, Fan, Fangfang, Gong, Yanjun, Wang, Zhi, Shi, Qiuping, Chen, Dafang, Huo, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7160370/
https://www.ncbi.nlm.nih.gov/pubmed/32328087
http://dx.doi.org/10.3389/fgene.2020.00336
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author Zheng, Qiwen
Zhang, Yan
Jiang, Jie
Jia, Jia
Fan, Fangfang
Gong, Yanjun
Wang, Zhi
Shi, Qiuping
Chen, Dafang
Huo, Yong
author_facet Zheng, Qiwen
Zhang, Yan
Jiang, Jie
Jia, Jia
Fan, Fangfang
Gong, Yanjun
Wang, Zhi
Shi, Qiuping
Chen, Dafang
Huo, Yong
author_sort Zheng, Qiwen
collection PubMed
description Genome-wide association studies have identified more than 150 susceptibility loci for coronary artery disease (CAD); however, there is still a large proportion of missing heritability remaining to be investigated. This study sought to identify population-based genetic variation associated with acute coronary syndromes (ACS) in individuals of Chinese Han descent. We proposed a novel strategy integrating a well-developed risk prediction model into control selection in order to lower the potential misclassification bias and increase the statistical power. An exome-wide association analysis was performed for 1,669 ACS patients and 1,935 healthy controls. Promising variants were further replicated using the existing in silico dataset. Additionally, we performed gene- and pathway-based analyses to investigate the aggregate effect of multiple variants within the same genes or pathways. Although none of the association signals were consistent across studies after Bonferroni correction, one promising variant, rs10409124 at STRN4, showed potential impact on ACS in both European and East Asian populations. Gene-based analysis explored four genes (ANXA7, ZNF655, ZNF347, and ZNF750) that showed evidence for association with ACS after multiple test correction, and identification of ZNF655 was successfully replicated by another dataset. Pathway-based analysis revealed that 32 potential pathways might be involved in the pathogenesis of ACS. Our study identified several candidate genes and pathways associated with ACS. Future studies are needed to further validate these findings and explore these genes and pathways as potential therapeutic targets in ACS.
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spelling pubmed-71603702020-04-23 Exome-Wide Association Study Reveals Several Susceptibility Genes and Pathways Associated With Acute Coronary Syndromes in Han Chinese Zheng, Qiwen Zhang, Yan Jiang, Jie Jia, Jia Fan, Fangfang Gong, Yanjun Wang, Zhi Shi, Qiuping Chen, Dafang Huo, Yong Front Genet Genetics Genome-wide association studies have identified more than 150 susceptibility loci for coronary artery disease (CAD); however, there is still a large proportion of missing heritability remaining to be investigated. This study sought to identify population-based genetic variation associated with acute coronary syndromes (ACS) in individuals of Chinese Han descent. We proposed a novel strategy integrating a well-developed risk prediction model into control selection in order to lower the potential misclassification bias and increase the statistical power. An exome-wide association analysis was performed for 1,669 ACS patients and 1,935 healthy controls. Promising variants were further replicated using the existing in silico dataset. Additionally, we performed gene- and pathway-based analyses to investigate the aggregate effect of multiple variants within the same genes or pathways. Although none of the association signals were consistent across studies after Bonferroni correction, one promising variant, rs10409124 at STRN4, showed potential impact on ACS in both European and East Asian populations. Gene-based analysis explored four genes (ANXA7, ZNF655, ZNF347, and ZNF750) that showed evidence for association with ACS after multiple test correction, and identification of ZNF655 was successfully replicated by another dataset. Pathway-based analysis revealed that 32 potential pathways might be involved in the pathogenesis of ACS. Our study identified several candidate genes and pathways associated with ACS. Future studies are needed to further validate these findings and explore these genes and pathways as potential therapeutic targets in ACS. Frontiers Media S.A. 2020-04-09 /pmc/articles/PMC7160370/ /pubmed/32328087 http://dx.doi.org/10.3389/fgene.2020.00336 Text en Copyright © 2020 Zheng, Zhang, Jiang, Jia, Fan, Gong, Wang, Shi, Chen and Huo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zheng, Qiwen
Zhang, Yan
Jiang, Jie
Jia, Jia
Fan, Fangfang
Gong, Yanjun
Wang, Zhi
Shi, Qiuping
Chen, Dafang
Huo, Yong
Exome-Wide Association Study Reveals Several Susceptibility Genes and Pathways Associated With Acute Coronary Syndromes in Han Chinese
title Exome-Wide Association Study Reveals Several Susceptibility Genes and Pathways Associated With Acute Coronary Syndromes in Han Chinese
title_full Exome-Wide Association Study Reveals Several Susceptibility Genes and Pathways Associated With Acute Coronary Syndromes in Han Chinese
title_fullStr Exome-Wide Association Study Reveals Several Susceptibility Genes and Pathways Associated With Acute Coronary Syndromes in Han Chinese
title_full_unstemmed Exome-Wide Association Study Reveals Several Susceptibility Genes and Pathways Associated With Acute Coronary Syndromes in Han Chinese
title_short Exome-Wide Association Study Reveals Several Susceptibility Genes and Pathways Associated With Acute Coronary Syndromes in Han Chinese
title_sort exome-wide association study reveals several susceptibility genes and pathways associated with acute coronary syndromes in han chinese
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7160370/
https://www.ncbi.nlm.nih.gov/pubmed/32328087
http://dx.doi.org/10.3389/fgene.2020.00336
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