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Genomic characterization of a novel SARS-CoV-2

A new severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) associated with human to human transmission and extreme human sickness has been as of late announced from the city of Wuhan in China. Our objectives were to mutation analysis between recently reported genomes at various times and loc...

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Autores principales: Khailany, Rozhgar A., Safdar, Muhamad, Ozaslan, Mehmet
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161481/
https://www.ncbi.nlm.nih.gov/pubmed/32300673
http://dx.doi.org/10.1016/j.genrep.2020.100682
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author Khailany, Rozhgar A.
Safdar, Muhamad
Ozaslan, Mehmet
author_facet Khailany, Rozhgar A.
Safdar, Muhamad
Ozaslan, Mehmet
author_sort Khailany, Rozhgar A.
collection PubMed
description A new severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) associated with human to human transmission and extreme human sickness has been as of late announced from the city of Wuhan in China. Our objectives were to mutation analysis between recently reported genomes at various times and locations and to characterize the genomic structure of SARS-CoV-2 using bioinformatics programs. Information on the variation of viruses is of considerable medical and biological impacts on the prevention, diagnosis, and therapy of infectious diseases. To understand the genomic structure and variations of the SARS-CoV-2. The study analyzed 95 SARS-CoV-2 complete genome sequences available in GenBank, National MicrobiologyData Center (NMDC) and NGDC Genome Warehouse from December-2019 until 05 of April-2020. The genomic signature analysis demonstrates that a strong association between the time of sample collection, location of sample and accumulation of genetic diversity. We found 116 mutations, the three most common mutations were 8782C>T in ORF1ab gene, 28144T>C in ORF8 gene and 29095C>T in the N gene. The mutations might affect the severity and spread of the SARS-CoV-2. The finding heavily supports an intense requirement for additional prompt, inclusive investigations that combine genomic detail, epidemiological information and graph records of the clinical features of patients with COVID-19.
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spelling pubmed-71614812020-04-16 Genomic characterization of a novel SARS-CoV-2 Khailany, Rozhgar A. Safdar, Muhamad Ozaslan, Mehmet Gene Rep Article A new severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) associated with human to human transmission and extreme human sickness has been as of late announced from the city of Wuhan in China. Our objectives were to mutation analysis between recently reported genomes at various times and locations and to characterize the genomic structure of SARS-CoV-2 using bioinformatics programs. Information on the variation of viruses is of considerable medical and biological impacts on the prevention, diagnosis, and therapy of infectious diseases. To understand the genomic structure and variations of the SARS-CoV-2. The study analyzed 95 SARS-CoV-2 complete genome sequences available in GenBank, National MicrobiologyData Center (NMDC) and NGDC Genome Warehouse from December-2019 until 05 of April-2020. The genomic signature analysis demonstrates that a strong association between the time of sample collection, location of sample and accumulation of genetic diversity. We found 116 mutations, the three most common mutations were 8782C>T in ORF1ab gene, 28144T>C in ORF8 gene and 29095C>T in the N gene. The mutations might affect the severity and spread of the SARS-CoV-2. The finding heavily supports an intense requirement for additional prompt, inclusive investigations that combine genomic detail, epidemiological information and graph records of the clinical features of patients with COVID-19. Elsevier Inc. 2020-06 2020-04-16 /pmc/articles/PMC7161481/ /pubmed/32300673 http://dx.doi.org/10.1016/j.genrep.2020.100682 Text en © 2020 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Khailany, Rozhgar A.
Safdar, Muhamad
Ozaslan, Mehmet
Genomic characterization of a novel SARS-CoV-2
title Genomic characterization of a novel SARS-CoV-2
title_full Genomic characterization of a novel SARS-CoV-2
title_fullStr Genomic characterization of a novel SARS-CoV-2
title_full_unstemmed Genomic characterization of a novel SARS-CoV-2
title_short Genomic characterization of a novel SARS-CoV-2
title_sort genomic characterization of a novel sars-cov-2
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161481/
https://www.ncbi.nlm.nih.gov/pubmed/32300673
http://dx.doi.org/10.1016/j.genrep.2020.100682
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