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Metagenomics for taxonomy profiling: tools and approaches

The study of metagenomics is an emerging field that identifies the total genetic materials in an organism along with the set of all genetic materials like deoxyribonucleic acid and ribose nucleic acid, which play a key role with the maintenance of cellular functions. The best part of this technology...

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Autores principales: Kumar Awasthi, Mukesh, Ravindran, B., Sarsaiya, Surendra, Chen, Hongyu, Wainaina, Steven, Singh, Ekta, Liu, Tao, Kumar, Sunil, Pandey, Ashok, Singh, Lal, Zhang, Zengqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161568/
https://www.ncbi.nlm.nih.gov/pubmed/32149573
http://dx.doi.org/10.1080/21655979.2020.1736238
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author Kumar Awasthi, Mukesh
Ravindran, B.
Sarsaiya, Surendra
Chen, Hongyu
Wainaina, Steven
Singh, Ekta
Liu, Tao
Kumar, Sunil
Pandey, Ashok
Singh, Lal
Zhang, Zengqiang
author_facet Kumar Awasthi, Mukesh
Ravindran, B.
Sarsaiya, Surendra
Chen, Hongyu
Wainaina, Steven
Singh, Ekta
Liu, Tao
Kumar, Sunil
Pandey, Ashok
Singh, Lal
Zhang, Zengqiang
author_sort Kumar Awasthi, Mukesh
collection PubMed
description The study of metagenomics is an emerging field that identifies the total genetic materials in an organism along with the set of all genetic materials like deoxyribonucleic acid and ribose nucleic acid, which play a key role with the maintenance of cellular functions. The best part of this technology is that it gives more flexibility to environmental microbiologists to instantly pioneer the immense genetic variability of microbial communities. However, it is intensively complex to identify the suitable sequencing measures of any specific gene that can exclusively indicate the involvement of microbial metagenomes and be able to advance valuable results about these communities. This review provides an overview of the metagenomic advancement that has been advantageous for aggregation of more knowledge about specific genes, microbial communities and its metabolic pathways. More specific drawbacks of metagenomes technology mainly depend on sequence-based analysis. Therefore, this ‘targeted based metagenomics’ approach will give comprehensive knowledge about the ecological, evolutionary and functional sequence of significantly important genes that naturally exist in living beings either human, animal and microorganisms from distinctive ecosystems.
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spelling pubmed-71615682021-03-09 Metagenomics for taxonomy profiling: tools and approaches Kumar Awasthi, Mukesh Ravindran, B. Sarsaiya, Surendra Chen, Hongyu Wainaina, Steven Singh, Ekta Liu, Tao Kumar, Sunil Pandey, Ashok Singh, Lal Zhang, Zengqiang Bioengineered Review The study of metagenomics is an emerging field that identifies the total genetic materials in an organism along with the set of all genetic materials like deoxyribonucleic acid and ribose nucleic acid, which play a key role with the maintenance of cellular functions. The best part of this technology is that it gives more flexibility to environmental microbiologists to instantly pioneer the immense genetic variability of microbial communities. However, it is intensively complex to identify the suitable sequencing measures of any specific gene that can exclusively indicate the involvement of microbial metagenomes and be able to advance valuable results about these communities. This review provides an overview of the metagenomic advancement that has been advantageous for aggregation of more knowledge about specific genes, microbial communities and its metabolic pathways. More specific drawbacks of metagenomes technology mainly depend on sequence-based analysis. Therefore, this ‘targeted based metagenomics’ approach will give comprehensive knowledge about the ecological, evolutionary and functional sequence of significantly important genes that naturally exist in living beings either human, animal and microorganisms from distinctive ecosystems. Taylor & Francis 2020-03-09 /pmc/articles/PMC7161568/ /pubmed/32149573 http://dx.doi.org/10.1080/21655979.2020.1736238 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review
Kumar Awasthi, Mukesh
Ravindran, B.
Sarsaiya, Surendra
Chen, Hongyu
Wainaina, Steven
Singh, Ekta
Liu, Tao
Kumar, Sunil
Pandey, Ashok
Singh, Lal
Zhang, Zengqiang
Metagenomics for taxonomy profiling: tools and approaches
title Metagenomics for taxonomy profiling: tools and approaches
title_full Metagenomics for taxonomy profiling: tools and approaches
title_fullStr Metagenomics for taxonomy profiling: tools and approaches
title_full_unstemmed Metagenomics for taxonomy profiling: tools and approaches
title_short Metagenomics for taxonomy profiling: tools and approaches
title_sort metagenomics for taxonomy profiling: tools and approaches
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161568/
https://www.ncbi.nlm.nih.gov/pubmed/32149573
http://dx.doi.org/10.1080/21655979.2020.1736238
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