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Metagenomics for taxonomy profiling: tools and approaches
The study of metagenomics is an emerging field that identifies the total genetic materials in an organism along with the set of all genetic materials like deoxyribonucleic acid and ribose nucleic acid, which play a key role with the maintenance of cellular functions. The best part of this technology...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161568/ https://www.ncbi.nlm.nih.gov/pubmed/32149573 http://dx.doi.org/10.1080/21655979.2020.1736238 |
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author | Kumar Awasthi, Mukesh Ravindran, B. Sarsaiya, Surendra Chen, Hongyu Wainaina, Steven Singh, Ekta Liu, Tao Kumar, Sunil Pandey, Ashok Singh, Lal Zhang, Zengqiang |
author_facet | Kumar Awasthi, Mukesh Ravindran, B. Sarsaiya, Surendra Chen, Hongyu Wainaina, Steven Singh, Ekta Liu, Tao Kumar, Sunil Pandey, Ashok Singh, Lal Zhang, Zengqiang |
author_sort | Kumar Awasthi, Mukesh |
collection | PubMed |
description | The study of metagenomics is an emerging field that identifies the total genetic materials in an organism along with the set of all genetic materials like deoxyribonucleic acid and ribose nucleic acid, which play a key role with the maintenance of cellular functions. The best part of this technology is that it gives more flexibility to environmental microbiologists to instantly pioneer the immense genetic variability of microbial communities. However, it is intensively complex to identify the suitable sequencing measures of any specific gene that can exclusively indicate the involvement of microbial metagenomes and be able to advance valuable results about these communities. This review provides an overview of the metagenomic advancement that has been advantageous for aggregation of more knowledge about specific genes, microbial communities and its metabolic pathways. More specific drawbacks of metagenomes technology mainly depend on sequence-based analysis. Therefore, this ‘targeted based metagenomics’ approach will give comprehensive knowledge about the ecological, evolutionary and functional sequence of significantly important genes that naturally exist in living beings either human, animal and microorganisms from distinctive ecosystems. |
format | Online Article Text |
id | pubmed-7161568 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-71615682021-03-09 Metagenomics for taxonomy profiling: tools and approaches Kumar Awasthi, Mukesh Ravindran, B. Sarsaiya, Surendra Chen, Hongyu Wainaina, Steven Singh, Ekta Liu, Tao Kumar, Sunil Pandey, Ashok Singh, Lal Zhang, Zengqiang Bioengineered Review The study of metagenomics is an emerging field that identifies the total genetic materials in an organism along with the set of all genetic materials like deoxyribonucleic acid and ribose nucleic acid, which play a key role with the maintenance of cellular functions. The best part of this technology is that it gives more flexibility to environmental microbiologists to instantly pioneer the immense genetic variability of microbial communities. However, it is intensively complex to identify the suitable sequencing measures of any specific gene that can exclusively indicate the involvement of microbial metagenomes and be able to advance valuable results about these communities. This review provides an overview of the metagenomic advancement that has been advantageous for aggregation of more knowledge about specific genes, microbial communities and its metabolic pathways. More specific drawbacks of metagenomes technology mainly depend on sequence-based analysis. Therefore, this ‘targeted based metagenomics’ approach will give comprehensive knowledge about the ecological, evolutionary and functional sequence of significantly important genes that naturally exist in living beings either human, animal and microorganisms from distinctive ecosystems. Taylor & Francis 2020-03-09 /pmc/articles/PMC7161568/ /pubmed/32149573 http://dx.doi.org/10.1080/21655979.2020.1736238 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Review Kumar Awasthi, Mukesh Ravindran, B. Sarsaiya, Surendra Chen, Hongyu Wainaina, Steven Singh, Ekta Liu, Tao Kumar, Sunil Pandey, Ashok Singh, Lal Zhang, Zengqiang Metagenomics for taxonomy profiling: tools and approaches |
title | Metagenomics for taxonomy profiling: tools and approaches |
title_full | Metagenomics for taxonomy profiling: tools and approaches |
title_fullStr | Metagenomics for taxonomy profiling: tools and approaches |
title_full_unstemmed | Metagenomics for taxonomy profiling: tools and approaches |
title_short | Metagenomics for taxonomy profiling: tools and approaches |
title_sort | metagenomics for taxonomy profiling: tools and approaches |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161568/ https://www.ncbi.nlm.nih.gov/pubmed/32149573 http://dx.doi.org/10.1080/21655979.2020.1736238 |
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