Cargando…

Discovery of Herbal Pairs Containing Gastrodia elata Based on Data Mining and the Delphi Expert Questionnaire and Their Potential Effects on Stroke through Network Pharmacology

BACKGROUND: Traditional Chinese medicine (TCM) formulae can be regarded as a source of new antistroke drugs. The aim of this study was to discover herbal pairs containing Gastrodia elata (Tianma, TM) from formulae based on data mining and the Delphi expert questionnaire. The proposed approach for di...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhou, Rongrong, Zhu, Yan, Yang, Wei, Zhang, Fengrong, Wang, Junwen, Yan, Runhong, Tang, Shihuan, Li, Zhiyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7163411/
https://www.ncbi.nlm.nih.gov/pubmed/32328128
http://dx.doi.org/10.1155/2020/4263591
_version_ 1783523208596553728
author Zhou, Rongrong
Zhu, Yan
Yang, Wei
Zhang, Fengrong
Wang, Junwen
Yan, Runhong
Tang, Shihuan
Li, Zhiyong
author_facet Zhou, Rongrong
Zhu, Yan
Yang, Wei
Zhang, Fengrong
Wang, Junwen
Yan, Runhong
Tang, Shihuan
Li, Zhiyong
author_sort Zhou, Rongrong
collection PubMed
description BACKGROUND: Traditional Chinese medicine (TCM) formulae can be regarded as a source of new antistroke drugs. The aim of this study was to discover herbal pairs containing Gastrodia elata (Tianma, TM) from formulae based on data mining and the Delphi expert questionnaire. The proposed approach for discovering new herbal combinations, which included data mining, a clinical investigation, and a network pharmacology analysis, was evaluated in this study. METHODS: A database of formulae containing TM was established. All possible herbal pairs were acquired by data mining association rules, and herbal pairs containing TM were screened according to the Support and Confidence levels. Taking stroke as the research object, the relationships between herbal pairs containing TM and stroke were explored by the Delphi expert questionnaire and statistical methods. To explore the effects of herbal pairs containing TM on stroke, a network pharmacology analysis was performed to predict core targets, biological functions, pathways, and mechanisms of action. RESULTS: A total of 1903 formulae containing TM, involving 896 Chinese herbal medicines (CHMs) and 126 herbal pairs containing RG, were analyzed by association rules. A total of 27 herbal pairs were further screened according to the Support and Confidence levels. Twelve herbal pairs containing RG were added according to the expert questionnaires. Weightiness analysis showed that 9 groups of core herbal pairs contained RG, including TM-QX, TM-JH, TM-CX, TM-GG, TM-SJM, TM-JC, TM-SCP, TM-MJZ, and TM-GT. Two core herbal pairs, TM-JH and TM-CX, were randomly screened to explore their network pharmacological mechanisms in stroke. The important biological targets for network pharmacological analysis of TM-CX and TM-JH related to stroke were PTGS2, ACE, APP, NOS1, and NOS2. An herbal pair-compound-core target-pathway network (H-C-T-P network) was established, and arginine biosynthesis, arginine and proline metabolism, and the relaxin signaling pathway were identified by enrichment analysis. CONCLUSION: The herbal pairs of TM-CX and TM-JH obtained from data mining and the expert investigation were found to have effects of preventing and treating stroke through network pharmacology. This could be a viable approach to uncover hidden knowledge about TCM formulae and to discover herbal combinations with clinical and medicinal value based on data mining and questionnaires.
format Online
Article
Text
id pubmed-7163411
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-71634112020-04-23 Discovery of Herbal Pairs Containing Gastrodia elata Based on Data Mining and the Delphi Expert Questionnaire and Their Potential Effects on Stroke through Network Pharmacology Zhou, Rongrong Zhu, Yan Yang, Wei Zhang, Fengrong Wang, Junwen Yan, Runhong Tang, Shihuan Li, Zhiyong Evid Based Complement Alternat Med Research Article BACKGROUND: Traditional Chinese medicine (TCM) formulae can be regarded as a source of new antistroke drugs. The aim of this study was to discover herbal pairs containing Gastrodia elata (Tianma, TM) from formulae based on data mining and the Delphi expert questionnaire. The proposed approach for discovering new herbal combinations, which included data mining, a clinical investigation, and a network pharmacology analysis, was evaluated in this study. METHODS: A database of formulae containing TM was established. All possible herbal pairs were acquired by data mining association rules, and herbal pairs containing TM were screened according to the Support and Confidence levels. Taking stroke as the research object, the relationships between herbal pairs containing TM and stroke were explored by the Delphi expert questionnaire and statistical methods. To explore the effects of herbal pairs containing TM on stroke, a network pharmacology analysis was performed to predict core targets, biological functions, pathways, and mechanisms of action. RESULTS: A total of 1903 formulae containing TM, involving 896 Chinese herbal medicines (CHMs) and 126 herbal pairs containing RG, were analyzed by association rules. A total of 27 herbal pairs were further screened according to the Support and Confidence levels. Twelve herbal pairs containing RG were added according to the expert questionnaires. Weightiness analysis showed that 9 groups of core herbal pairs contained RG, including TM-QX, TM-JH, TM-CX, TM-GG, TM-SJM, TM-JC, TM-SCP, TM-MJZ, and TM-GT. Two core herbal pairs, TM-JH and TM-CX, were randomly screened to explore their network pharmacological mechanisms in stroke. The important biological targets for network pharmacological analysis of TM-CX and TM-JH related to stroke were PTGS2, ACE, APP, NOS1, and NOS2. An herbal pair-compound-core target-pathway network (H-C-T-P network) was established, and arginine biosynthesis, arginine and proline metabolism, and the relaxin signaling pathway were identified by enrichment analysis. CONCLUSION: The herbal pairs of TM-CX and TM-JH obtained from data mining and the expert investigation were found to have effects of preventing and treating stroke through network pharmacology. This could be a viable approach to uncover hidden knowledge about TCM formulae and to discover herbal combinations with clinical and medicinal value based on data mining and questionnaires. Hindawi 2020-04-05 /pmc/articles/PMC7163411/ /pubmed/32328128 http://dx.doi.org/10.1155/2020/4263591 Text en Copyright © 2020 Rongrong Zhou et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhou, Rongrong
Zhu, Yan
Yang, Wei
Zhang, Fengrong
Wang, Junwen
Yan, Runhong
Tang, Shihuan
Li, Zhiyong
Discovery of Herbal Pairs Containing Gastrodia elata Based on Data Mining and the Delphi Expert Questionnaire and Their Potential Effects on Stroke through Network Pharmacology
title Discovery of Herbal Pairs Containing Gastrodia elata Based on Data Mining and the Delphi Expert Questionnaire and Their Potential Effects on Stroke through Network Pharmacology
title_full Discovery of Herbal Pairs Containing Gastrodia elata Based on Data Mining and the Delphi Expert Questionnaire and Their Potential Effects on Stroke through Network Pharmacology
title_fullStr Discovery of Herbal Pairs Containing Gastrodia elata Based on Data Mining and the Delphi Expert Questionnaire and Their Potential Effects on Stroke through Network Pharmacology
title_full_unstemmed Discovery of Herbal Pairs Containing Gastrodia elata Based on Data Mining and the Delphi Expert Questionnaire and Their Potential Effects on Stroke through Network Pharmacology
title_short Discovery of Herbal Pairs Containing Gastrodia elata Based on Data Mining and the Delphi Expert Questionnaire and Their Potential Effects on Stroke through Network Pharmacology
title_sort discovery of herbal pairs containing gastrodia elata based on data mining and the delphi expert questionnaire and their potential effects on stroke through network pharmacology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7163411/
https://www.ncbi.nlm.nih.gov/pubmed/32328128
http://dx.doi.org/10.1155/2020/4263591
work_keys_str_mv AT zhourongrong discoveryofherbalpairscontaininggastrodiaelatabasedondataminingandthedelphiexpertquestionnaireandtheirpotentialeffectsonstrokethroughnetworkpharmacology
AT zhuyan discoveryofherbalpairscontaininggastrodiaelatabasedondataminingandthedelphiexpertquestionnaireandtheirpotentialeffectsonstrokethroughnetworkpharmacology
AT yangwei discoveryofherbalpairscontaininggastrodiaelatabasedondataminingandthedelphiexpertquestionnaireandtheirpotentialeffectsonstrokethroughnetworkpharmacology
AT zhangfengrong discoveryofherbalpairscontaininggastrodiaelatabasedondataminingandthedelphiexpertquestionnaireandtheirpotentialeffectsonstrokethroughnetworkpharmacology
AT wangjunwen discoveryofherbalpairscontaininggastrodiaelatabasedondataminingandthedelphiexpertquestionnaireandtheirpotentialeffectsonstrokethroughnetworkpharmacology
AT yanrunhong discoveryofherbalpairscontaininggastrodiaelatabasedondataminingandthedelphiexpertquestionnaireandtheirpotentialeffectsonstrokethroughnetworkpharmacology
AT tangshihuan discoveryofherbalpairscontaininggastrodiaelatabasedondataminingandthedelphiexpertquestionnaireandtheirpotentialeffectsonstrokethroughnetworkpharmacology
AT lizhiyong discoveryofherbalpairscontaininggastrodiaelatabasedondataminingandthedelphiexpertquestionnaireandtheirpotentialeffectsonstrokethroughnetworkpharmacology