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Adverse Events in Twitter-Development of a Benchmark Reference Dataset: Results from IMI WEB-RADR

INTRODUCTION AND OBJECTIVE: Social media has been suggested as a source for safety information, supplementing existing safety surveillance data sources. This article summarises the activities undertaken, and the associated challenges, to create a benchmark reference dataset that can be used to evalu...

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Autores principales: Dietrich, Juergen, Gattepaille, Lucie M., Grum, Britta Anne, Jiri, Letitia, Lerch, Magnus, Sartori, Daniele, Wisniewski, Antoni
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7165158/
https://www.ncbi.nlm.nih.gov/pubmed/31997289
http://dx.doi.org/10.1007/s40264-020-00912-9
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author Dietrich, Juergen
Gattepaille, Lucie M.
Grum, Britta Anne
Jiri, Letitia
Lerch, Magnus
Sartori, Daniele
Wisniewski, Antoni
author_facet Dietrich, Juergen
Gattepaille, Lucie M.
Grum, Britta Anne
Jiri, Letitia
Lerch, Magnus
Sartori, Daniele
Wisniewski, Antoni
author_sort Dietrich, Juergen
collection PubMed
description INTRODUCTION AND OBJECTIVE: Social media has been suggested as a source for safety information, supplementing existing safety surveillance data sources. This article summarises the activities undertaken, and the associated challenges, to create a benchmark reference dataset that can be used to evaluate the performance of automated methods and systems for adverse event recognition. METHODS: A retrospective analysis of public English-language Twitter posts (Tweets) was performed. We sampled 57,473 Tweets out of 5,645,336 Tweets created between 1 March, 2012 and 1 March, 2015 that mentioned at least one of six medicinal products of interest (insulin glargine, levetiracetam, methylphenidate, sorafenib, terbinafine, zolpidem). Products, adverse events, indications, product-event combinations, and product-indication combinations were extracted and coded by two independent teams of safety reviewers. RESULTS: The benchmark reference dataset consisted of 1056 positive controls (“adverse event Tweets”) and 56,417 negative controls (“non-adverse event Tweets”). The 1056 adverse event Tweets contained 1396 product-event combinations referring to personal adverse event experiences, comprising 292 different MedDRA(®) Preferred Terms. The 1171 product-event combinations (83.9%) were confined to four MedDRA(®) System Organ Classes. The 195 Tweets (18.5%) contained indication information, comprising 25 different Preferred Terms. CONCLUSIONS: A manually curated benchmark reference dataset based on Twitter data has been created and is made available to the research community to evaluate the performance of automated methods and systems for adverse event recognition in unstructured free-text information. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s40264-020-00912-9) contains supplementary material, which is available to authorized users.
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spelling pubmed-71651582020-04-24 Adverse Events in Twitter-Development of a Benchmark Reference Dataset: Results from IMI WEB-RADR Dietrich, Juergen Gattepaille, Lucie M. Grum, Britta Anne Jiri, Letitia Lerch, Magnus Sartori, Daniele Wisniewski, Antoni Drug Saf Original Research Article INTRODUCTION AND OBJECTIVE: Social media has been suggested as a source for safety information, supplementing existing safety surveillance data sources. This article summarises the activities undertaken, and the associated challenges, to create a benchmark reference dataset that can be used to evaluate the performance of automated methods and systems for adverse event recognition. METHODS: A retrospective analysis of public English-language Twitter posts (Tweets) was performed. We sampled 57,473 Tweets out of 5,645,336 Tweets created between 1 March, 2012 and 1 March, 2015 that mentioned at least one of six medicinal products of interest (insulin glargine, levetiracetam, methylphenidate, sorafenib, terbinafine, zolpidem). Products, adverse events, indications, product-event combinations, and product-indication combinations were extracted and coded by two independent teams of safety reviewers. RESULTS: The benchmark reference dataset consisted of 1056 positive controls (“adverse event Tweets”) and 56,417 negative controls (“non-adverse event Tweets”). The 1056 adverse event Tweets contained 1396 product-event combinations referring to personal adverse event experiences, comprising 292 different MedDRA(®) Preferred Terms. The 1171 product-event combinations (83.9%) were confined to four MedDRA(®) System Organ Classes. The 195 Tweets (18.5%) contained indication information, comprising 25 different Preferred Terms. CONCLUSIONS: A manually curated benchmark reference dataset based on Twitter data has been created and is made available to the research community to evaluate the performance of automated methods and systems for adverse event recognition in unstructured free-text information. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s40264-020-00912-9) contains supplementary material, which is available to authorized users. Springer International Publishing 2020-01-29 2020 /pmc/articles/PMC7165158/ /pubmed/31997289 http://dx.doi.org/10.1007/s40264-020-00912-9 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License, which permits any non-commercial use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder.To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc/4.0/.
spellingShingle Original Research Article
Dietrich, Juergen
Gattepaille, Lucie M.
Grum, Britta Anne
Jiri, Letitia
Lerch, Magnus
Sartori, Daniele
Wisniewski, Antoni
Adverse Events in Twitter-Development of a Benchmark Reference Dataset: Results from IMI WEB-RADR
title Adverse Events in Twitter-Development of a Benchmark Reference Dataset: Results from IMI WEB-RADR
title_full Adverse Events in Twitter-Development of a Benchmark Reference Dataset: Results from IMI WEB-RADR
title_fullStr Adverse Events in Twitter-Development of a Benchmark Reference Dataset: Results from IMI WEB-RADR
title_full_unstemmed Adverse Events in Twitter-Development of a Benchmark Reference Dataset: Results from IMI WEB-RADR
title_short Adverse Events in Twitter-Development of a Benchmark Reference Dataset: Results from IMI WEB-RADR
title_sort adverse events in twitter-development of a benchmark reference dataset: results from imi web-radr
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7165158/
https://www.ncbi.nlm.nih.gov/pubmed/31997289
http://dx.doi.org/10.1007/s40264-020-00912-9
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