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Assessment of Renal Osteodystrophy via Computational Analysis of Label-free Raman Detection of Multiple Biomarkers

Accurate clinical evaluation of renal osteodystrophy (ROD) is currently accomplished using invasive in vivo transiliac bone biopsy, followed by in vitro histomorphometry. In this study, we demonstrate that an alternative method for ROD assessment is through a fast, label-free Raman recording of mult...

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Autores principales: Manciu, Marian, Cardenas, Mario, Bennet, Kevin E., Maran, Avudaiappan, Yaszemski, Michael J., Maldonado, Theresa A., Magiricu, Diana, Manciu, Felicia S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7168928/
https://www.ncbi.nlm.nih.gov/pubmed/32023980
http://dx.doi.org/10.3390/diagnostics10020079
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author Manciu, Marian
Cardenas, Mario
Bennet, Kevin E.
Maran, Avudaiappan
Yaszemski, Michael J.
Maldonado, Theresa A.
Magiricu, Diana
Manciu, Felicia S.
author_facet Manciu, Marian
Cardenas, Mario
Bennet, Kevin E.
Maran, Avudaiappan
Yaszemski, Michael J.
Maldonado, Theresa A.
Magiricu, Diana
Manciu, Felicia S.
author_sort Manciu, Marian
collection PubMed
description Accurate clinical evaluation of renal osteodystrophy (ROD) is currently accomplished using invasive in vivo transiliac bone biopsy, followed by in vitro histomorphometry. In this study, we demonstrate that an alternative method for ROD assessment is through a fast, label-free Raman recording of multiple biomarkers combined with computational analysis for predicting the minimally required number of spectra for sample classification at defined accuracies. Four clinically relevant biomarkers: the mineral-to-matrix ratio, the carbonate-to-matrix ratio, phenylalanine, and calcium contents were experimentally determined and simultaneously considered as input to a linear discriminant analysis (LDA). Additionally, sample evaluation was performed with a linear support vector machine (LSVM) algorithm, with a 300 variable input. The computed probabilities based on a single spectrum were only marginally different (~80% from LDA and ~87% from LSVM), both providing an unacceptable classification power for a correct sample assignment. However, the Type I and Type II assignment errors confirm that a relatively small number of independent spectra (7 spectra for Type I and 5 spectra for Type II) is necessary for a p < 0.05 error probability. This low number of spectra supports the practicality of future in vivo Raman translation for a fast and accurate ROD detection in clinical settings.
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spelling pubmed-71689282020-04-20 Assessment of Renal Osteodystrophy via Computational Analysis of Label-free Raman Detection of Multiple Biomarkers Manciu, Marian Cardenas, Mario Bennet, Kevin E. Maran, Avudaiappan Yaszemski, Michael J. Maldonado, Theresa A. Magiricu, Diana Manciu, Felicia S. Diagnostics (Basel) Article Accurate clinical evaluation of renal osteodystrophy (ROD) is currently accomplished using invasive in vivo transiliac bone biopsy, followed by in vitro histomorphometry. In this study, we demonstrate that an alternative method for ROD assessment is through a fast, label-free Raman recording of multiple biomarkers combined with computational analysis for predicting the minimally required number of spectra for sample classification at defined accuracies. Four clinically relevant biomarkers: the mineral-to-matrix ratio, the carbonate-to-matrix ratio, phenylalanine, and calcium contents were experimentally determined and simultaneously considered as input to a linear discriminant analysis (LDA). Additionally, sample evaluation was performed with a linear support vector machine (LSVM) algorithm, with a 300 variable input. The computed probabilities based on a single spectrum were only marginally different (~80% from LDA and ~87% from LSVM), both providing an unacceptable classification power for a correct sample assignment. However, the Type I and Type II assignment errors confirm that a relatively small number of independent spectra (7 spectra for Type I and 5 spectra for Type II) is necessary for a p < 0.05 error probability. This low number of spectra supports the practicality of future in vivo Raman translation for a fast and accurate ROD detection in clinical settings. MDPI 2020-01-31 /pmc/articles/PMC7168928/ /pubmed/32023980 http://dx.doi.org/10.3390/diagnostics10020079 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Manciu, Marian
Cardenas, Mario
Bennet, Kevin E.
Maran, Avudaiappan
Yaszemski, Michael J.
Maldonado, Theresa A.
Magiricu, Diana
Manciu, Felicia S.
Assessment of Renal Osteodystrophy via Computational Analysis of Label-free Raman Detection of Multiple Biomarkers
title Assessment of Renal Osteodystrophy via Computational Analysis of Label-free Raman Detection of Multiple Biomarkers
title_full Assessment of Renal Osteodystrophy via Computational Analysis of Label-free Raman Detection of Multiple Biomarkers
title_fullStr Assessment of Renal Osteodystrophy via Computational Analysis of Label-free Raman Detection of Multiple Biomarkers
title_full_unstemmed Assessment of Renal Osteodystrophy via Computational Analysis of Label-free Raman Detection of Multiple Biomarkers
title_short Assessment of Renal Osteodystrophy via Computational Analysis of Label-free Raman Detection of Multiple Biomarkers
title_sort assessment of renal osteodystrophy via computational analysis of label-free raman detection of multiple biomarkers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7168928/
https://www.ncbi.nlm.nih.gov/pubmed/32023980
http://dx.doi.org/10.3390/diagnostics10020079
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