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Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights
Regulatory authorities require animal toxicity tests for new chemical entities. Organ weight changes are accepted as a sensitive indicator of chemically induced organ damage, but can be difficult to interpret because changes in organ weight might reflect chemically-induced changes in overall body we...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7170916/ https://www.ncbi.nlm.nih.gov/pubmed/32313041 http://dx.doi.org/10.1038/s41598-020-63465-y |
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author | Lazic, Stanley E. Semenova, Elizaveta Williams, Dominic P. |
author_facet | Lazic, Stanley E. Semenova, Elizaveta Williams, Dominic P. |
author_sort | Lazic, Stanley E. |
collection | PubMed |
description | Regulatory authorities require animal toxicity tests for new chemical entities. Organ weight changes are accepted as a sensitive indicator of chemically induced organ damage, but can be difficult to interpret because changes in organ weight might reflect chemically-induced changes in overall body weight. A common solution is to calculate the relative organ weight (organ to body weight ratio), but this inadequately controls for the dependence on body weight – a point made by statisticians for decades, but which has not been widely adopted. The recommended solution is an analysis of covariance (ANCOVA), but it is rarely used, possibly because both the method of statistical correction and the interpretation of the output may be unclear to those with minimal statistical training. Using relative organ weights can easily lead to incorrect conclusions, resulting in poor decisions, wasted resources, and an ethically questionable use of animals. We propose to cast the problem into a causal modelling framework as it directly assesses questions of scientific interest, the results are easy to interpret, and the analysis is simple to perform with freely available software. Furthermore, by taking a Bayesian approach we can model unequal variances, control for multiple testing, and directly provide evidence of safety. |
format | Online Article Text |
id | pubmed-7170916 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-71709162020-04-23 Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights Lazic, Stanley E. Semenova, Elizaveta Williams, Dominic P. Sci Rep Article Regulatory authorities require animal toxicity tests for new chemical entities. Organ weight changes are accepted as a sensitive indicator of chemically induced organ damage, but can be difficult to interpret because changes in organ weight might reflect chemically-induced changes in overall body weight. A common solution is to calculate the relative organ weight (organ to body weight ratio), but this inadequately controls for the dependence on body weight – a point made by statisticians for decades, but which has not been widely adopted. The recommended solution is an analysis of covariance (ANCOVA), but it is rarely used, possibly because both the method of statistical correction and the interpretation of the output may be unclear to those with minimal statistical training. Using relative organ weights can easily lead to incorrect conclusions, resulting in poor decisions, wasted resources, and an ethically questionable use of animals. We propose to cast the problem into a causal modelling framework as it directly assesses questions of scientific interest, the results are easy to interpret, and the analysis is simple to perform with freely available software. Furthermore, by taking a Bayesian approach we can model unequal variances, control for multiple testing, and directly provide evidence of safety. Nature Publishing Group UK 2020-04-20 /pmc/articles/PMC7170916/ /pubmed/32313041 http://dx.doi.org/10.1038/s41598-020-63465-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Lazic, Stanley E. Semenova, Elizaveta Williams, Dominic P. Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights |
title | Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights |
title_full | Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights |
title_fullStr | Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights |
title_full_unstemmed | Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights |
title_short | Determining organ weight toxicity with Bayesian causal models: Improving on the analysis of relative organ weights |
title_sort | determining organ weight toxicity with bayesian causal models: improving on the analysis of relative organ weights |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7170916/ https://www.ncbi.nlm.nih.gov/pubmed/32313041 http://dx.doi.org/10.1038/s41598-020-63465-y |
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