Cargando…

Practical application of bioinformatics by the multidisciplinary VIZIER consortium

This review focuses on bioinformatics technologies employed by the EU-sponsored multidisciplinary VIZIER consortium (Comparative Structural Genomics of Viral Enzymes Involved in Replication, FP6 Project: 2004-511960, active from 1 November 2004 to 30 April 2009), to achieve its goals. From the manag...

Descripción completa

Detalles Bibliográficos
Autores principales:	Gorbalenya, Alexander E., Lieutaud, Philippe, Harris, Mark R., Coutard, Bruno, Canard, Bruno, Kleywegt, Gerard J., Kravchenko, Alexander A., Samborskiy, Dmitry V., Sidorov, Igor A., Leontovich, Andrey M., Jones, T. Alwyn
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier B.V. 2010
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7172516/ https://www.ncbi.nlm.nih.gov/pubmed/20153379 http://dx.doi.org/10.1016/j.antiviral.2010.02.005

Ejemplares similares

The VIZIER project: Overview; expectations; and achievements
por: Coutard, Bruno, et al.
Publicado: (2010)

The VIZIER project: Preparedness against pathogenic RNA viruses
por: Coutard, B., et al.
Publicado: (2008)

Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses
por: Lehmann, Kathleen C., et al.
Publicado: (2015)

Imhotep, the Vizier and Physician of King Zoser and Afterwards the Egyptian God of Medicine
por: Packard, Francis R.
Publicado: (1927)

LAMPA, LArge Multidomain Protein Annotator, and its application to RNA virus polyproteins
por: Gulyaeva, Anastasia A, et al.
Publicado: (2020)

MeDor: a metaserver for predicting protein disorder
por: Lieutaud, Philippe, et al.
Publicado: (2008)

A second, non-canonical RNA-dependent RNA polymerase in SARS Coronavirus
por: Imbert, Isabelle, et al.
Publicado: (2006)

Design and validation of consensus-degenerate hybrid oligonucleotide primers for broad and sensitive detection of corona- and toroviruses
por: Zlateva, Kalina T., et al.
Publicado: (2011)

Snapshots of ADP-ribose bound to Getah virus macro domain reveal an intriguing choreography
por: Ferreira-Ramos, Ana Sofia, et al.
Publicado: (2020)

Comparative Production Analysis of Three Phlebovirus Nucleoproteins under Denaturing or Non-Denaturing Conditions for Crystallographic Studies
por: Lantez, Violaine, et al.
Publicado: (2011)

SNAD: sequence name annotation-based designer
por: Sidorov, Igor A, et al.
Publicado: (2009)

Arterivirus nsp12 versus the coronavirus nsp16 2′-O-methyltransferase: comparison of the C-terminal cleavage products of two nidovirus pp1ab polyproteins
por: Lehmann, Kathleen C., et al.
Publicado: (2015)

SARS-CoV ORF1b-encoded nonstructural proteins 12–16: Replicative enzymes as antiviral targets
por: Subissi, Lorenzo, et al.
Publicado: (2014)

The non‐structural protein Nsp10 of mouse hepatitis virus binds zinc ions and nucleic acids
por: Matthes, Nele, et al.
Publicado: (2006)

(1)H, (13)C, (15)N backbone resonance assignment of apo and ADP-ribose bound forms of the macro domain of Hepatitis E virus through solution NMR spectroscopy
por: Politi, Maria D., et al.
Publicado: (2022)

Structure of the C‐terminal domain of nsp4 from feline coronavirus
por: Manolaridis, Ioannis, et al.
Publicado: (2009)

The role of structural bioinformatics resources in the era of integrative structural biology
por: Gutmanas, Aleksandras, et al.
Publicado: (2013)

Crystal Structure and Functional Analysis of the SARS-Coronavirus RNA Cap 2′-O-Methyltransferase nsp10/nsp16 Complex
por: Decroly, Etienne, et al.
Publicado: (2011)

The methyltransferase domain of the Sudan ebolavirus L protein specifically targets internal adenosines of RNA substrates, in addition to the cap structure
por: Martin, Baptiste, et al.
Publicado: (2018)

Deciphering the Nucleotide and RNA Binding Selectivity of the Mayaro Virus Macro Domain
por: Tsika, Aikaterini C., et al.
Publicado: (2019)

First insights into the structural features of Ebola virus methyltransferase activities
por: Valle, Coralie, et al.
Publicado: (2021)

The Hexamer Structure of the Rift Valley Fever Virus Nucleoprotein Suggests a Mechanism for its Assembly into Ribonucleoprotein Complexes
por: Ferron, François, et al.
Publicado: (2011)

Internal RNA 2′O-methylation in the HIV-1 genome counteracts ISG20 nuclease-mediated antiviral effect
por: El Kazzi, Priscila, et al.
Publicado: (2022)

Structure-guided optimization of adenosine mimetics as selective and potent inhibitors of coronavirus nsp14 N7-methyltransferases
por: Hausdorff, Marcel, et al.
Publicado: (2023)

Understanding the alphaviruses: Recent research on important emerging pathogens and progress towards their control
por: Gould, E.A., et al.
Publicado: (2010)

Flavivirus NS3 and NS5 proteins interaction network: a high-throughput yeast two-hybrid screen
por: Le Breton, Marc, et al.
Publicado: (2011)

The N-Terminal Domain of the Arenavirus L Protein Is an RNA Endonuclease Essential in mRNA Transcription
por: Morin, Benjamin, et al.
Publicado: (2010)

Thriving in Multidisciplinary Research: Advice for New Bioinformatics Students
por: Auerbach, Raymond K.
Publicado: (2012)

The translation of recombinant proteins in E. coli can be improved by in silico generating and screening random libraries of a −70/+96 mRNA region with respect to the translation initiation codon
por: Care, S., et al.
Publicado: (2008)

Conformational plasticity of the VEEV macro domain is important for binding of ADP-ribose
por: Makrynitsa, Garyfallia I., et al.
Publicado: (2019)

NephCure Accelerating Cures Institute: A Multidisciplinary Consortium to Improve Care for Nephrotic Syndrome
por: Gipson, Debbie S., et al.
Publicado: (2017)

Expression, purification and crystallization of the SARS-CoV macro domain
por: Malet, Hélène, et al.
Publicado: (2006)

Crystallization and preliminary X-ray diffraction analysis of Nsp15 from SARS coronavirus
por: Ricagno, Stéfano, et al.
Publicado: (2006)

Interspecific adaptation by binary choice at de novo polyomavirus T antigen site through accelerated codon-constrained Val-Ala toggling within an intrinsically disordered region
por: Lauber, Chris, et al.
Publicado: (2015)

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
por: Katayama, Toshiaki, et al.
Publicado: (2010)

Crystallographic refinement of ligand complexes
por: Kleywegt, Gerard J.
Publicado: (2007)

On vital aid: the why, what and how of validation
por: Kleywegt, Gerard J.
Publicado: (2009)

Preliminary characterization of (nucleoside-2′-O-)-methyltransferase crystals from Meaban and Yokose flaviviruses. Corrigendum
por: Mastrangelo, Eloise, et al.
Publicado: (2007)

Rapid incorporation of Favipiravir by the fast and permissive viral RNA polymerase complex results in SARS-CoV-2 lethal mutagenesis
por: Shannon, Ashleigh, et al.
Publicado: (2020)

A multidisciplinary pulmonary embolism response team (PERT)—experience from a national multicenter consortium
por: Schultz, Jacob, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_c0carq3glprimhmnequ0m4eh6v