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The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining

To reconstruct the ceRNA biological network of cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) and to select an appropriate mRNA as a biomarker that could be used for CESC early diagnosis and prognosis evaluation. We downloaded CESC data from the TCGA public database, and sta...

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Autores principales: Ding, Hao, Xiong, Xiao-Xing, Fan, Guan-Lan, Yi, Yue-Xiong, Chen, Yu-Rou, Wang, Jing-Tao, Zhang, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7174939/
https://www.ncbi.nlm.nih.gov/pubmed/32351997
http://dx.doi.org/10.1155/2020/5478574
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author Ding, Hao
Xiong, Xiao-Xing
Fan, Guan-Lan
Yi, Yue-Xiong
Chen, Yu-Rou
Wang, Jing-Tao
Zhang, Wei
author_facet Ding, Hao
Xiong, Xiao-Xing
Fan, Guan-Lan
Yi, Yue-Xiong
Chen, Yu-Rou
Wang, Jing-Tao
Zhang, Wei
author_sort Ding, Hao
collection PubMed
description To reconstruct the ceRNA biological network of cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) and to select an appropriate mRNA as a biomarker that could be used for CESC early diagnosis and prognosis evaluation. We downloaded CESC data from the TCGA public database, and statistical analysis was conducted with the R software to find out differential expressed genes encoding for lncRNAs, miRNAs, and mRNAs. The differentially expressed mRNAs (DEmRNAs) screened in the ceRNA network were analyzed for survival to find the mRNAs with significantly linked to the survival prognosis. These mRNAs were searched in the Pathological Atlas to identify the final appropriate mRNAs. Differential expression analysis revealed 773 lncRNAs, 94 miRNAs, and 2466 mRNAs. Survival analysis of DEmRNAs in the ceRNA network indicated that ADGRF4, ANXA8L1, HCAR3, IRF6, and PDE2A (P < 0.05) were negatively correlated with survival time. Verification of these six DEmRNAs in the Pathology Atlas indicated that PDE2A was a possible biomarker for CESC patients. PDE2A might be a biomarker for early diagnosis and prognosis evaluation of CESC patients, but due to the lack of available data, further studies may be needed for confirmation.
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spelling pubmed-71749392020-04-29 The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining Ding, Hao Xiong, Xiao-Xing Fan, Guan-Lan Yi, Yue-Xiong Chen, Yu-Rou Wang, Jing-Tao Zhang, Wei Biomed Res Int Research Article To reconstruct the ceRNA biological network of cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) and to select an appropriate mRNA as a biomarker that could be used for CESC early diagnosis and prognosis evaluation. We downloaded CESC data from the TCGA public database, and statistical analysis was conducted with the R software to find out differential expressed genes encoding for lncRNAs, miRNAs, and mRNAs. The differentially expressed mRNAs (DEmRNAs) screened in the ceRNA network were analyzed for survival to find the mRNAs with significantly linked to the survival prognosis. These mRNAs were searched in the Pathological Atlas to identify the final appropriate mRNAs. Differential expression analysis revealed 773 lncRNAs, 94 miRNAs, and 2466 mRNAs. Survival analysis of DEmRNAs in the ceRNA network indicated that ADGRF4, ANXA8L1, HCAR3, IRF6, and PDE2A (P < 0.05) were negatively correlated with survival time. Verification of these six DEmRNAs in the Pathology Atlas indicated that PDE2A was a possible biomarker for CESC patients. PDE2A might be a biomarker for early diagnosis and prognosis evaluation of CESC patients, but due to the lack of available data, further studies may be needed for confirmation. Hindawi 2020-04-12 /pmc/articles/PMC7174939/ /pubmed/32351997 http://dx.doi.org/10.1155/2020/5478574 Text en Copyright © 2020 Hao Ding et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Ding, Hao
Xiong, Xiao-Xing
Fan, Guan-Lan
Yi, Yue-Xiong
Chen, Yu-Rou
Wang, Jing-Tao
Zhang, Wei
The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
title The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
title_full The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
title_fullStr The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
title_full_unstemmed The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
title_short The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining
title_sort new biomarker for cervical squamous cell carcinoma and endocervical adenocarcinoma (cesc) based on public database mining
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7174939/
https://www.ncbi.nlm.nih.gov/pubmed/32351997
http://dx.doi.org/10.1155/2020/5478574
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