Cargando…
A Constrained ICA-EMD Model for Group Level fMRI Analysis
Independent component analysis (ICA), being a data-driven method, has been shown to be a powerful tool for functional magnetic resonance imaging (fMRI) data analysis. One drawback of this multivariate approach is that it is not, in general, compatible with the analysis of group data. Various techniq...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7175031/ https://www.ncbi.nlm.nih.gov/pubmed/32351349 http://dx.doi.org/10.3389/fnins.2020.00221 |
_version_ | 1783524744863154176 |
---|---|
author | Wein, Simon Tomé, Ana M. Goldhacker, Markus Greenlee, Mark W. Lang, Elmar W. |
author_facet | Wein, Simon Tomé, Ana M. Goldhacker, Markus Greenlee, Mark W. Lang, Elmar W. |
author_sort | Wein, Simon |
collection | PubMed |
description | Independent component analysis (ICA), being a data-driven method, has been shown to be a powerful tool for functional magnetic resonance imaging (fMRI) data analysis. One drawback of this multivariate approach is that it is not, in general, compatible with the analysis of group data. Various techniques have been proposed to overcome this limitation of ICA. In this paper, a novel ICA-based workflow for extracting resting-state networks from fMRI group studies is proposed. An empirical mode decomposition (EMD) is used, in a data-driven manner, to generate reference signals that can be incorporated into a constrained version of ICA (cICA), thereby eliminating the inherent ambiguities of ICA. The results of the proposed workflow are then compared to those obtained by a widely used group ICA approach for fMRI analysis. In this study, we demonstrate that intrinsic modes, extracted by EMD, are suitable to serve as references for cICA. This approach yields typical resting-state patterns that are consistent over subjects. By introducing these reference signals into the ICA, our processing pipeline yields comparable activity patterns across subjects in a mathematically transparent manner. Our approach provides a user-friendly tool to adjust the trade-off between a high similarity across subjects and preserving individual subject features of the independent components. |
format | Online Article Text |
id | pubmed-7175031 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-71750312020-04-29 A Constrained ICA-EMD Model for Group Level fMRI Analysis Wein, Simon Tomé, Ana M. Goldhacker, Markus Greenlee, Mark W. Lang, Elmar W. Front Neurosci Neuroscience Independent component analysis (ICA), being a data-driven method, has been shown to be a powerful tool for functional magnetic resonance imaging (fMRI) data analysis. One drawback of this multivariate approach is that it is not, in general, compatible with the analysis of group data. Various techniques have been proposed to overcome this limitation of ICA. In this paper, a novel ICA-based workflow for extracting resting-state networks from fMRI group studies is proposed. An empirical mode decomposition (EMD) is used, in a data-driven manner, to generate reference signals that can be incorporated into a constrained version of ICA (cICA), thereby eliminating the inherent ambiguities of ICA. The results of the proposed workflow are then compared to those obtained by a widely used group ICA approach for fMRI analysis. In this study, we demonstrate that intrinsic modes, extracted by EMD, are suitable to serve as references for cICA. This approach yields typical resting-state patterns that are consistent over subjects. By introducing these reference signals into the ICA, our processing pipeline yields comparable activity patterns across subjects in a mathematically transparent manner. Our approach provides a user-friendly tool to adjust the trade-off between a high similarity across subjects and preserving individual subject features of the independent components. Frontiers Media S.A. 2020-04-15 /pmc/articles/PMC7175031/ /pubmed/32351349 http://dx.doi.org/10.3389/fnins.2020.00221 Text en Copyright © 2020 Wein, Tomé, Goldhacker, Greenlee and Lang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Wein, Simon Tomé, Ana M. Goldhacker, Markus Greenlee, Mark W. Lang, Elmar W. A Constrained ICA-EMD Model for Group Level fMRI Analysis |
title | A Constrained ICA-EMD Model for Group Level fMRI Analysis |
title_full | A Constrained ICA-EMD Model for Group Level fMRI Analysis |
title_fullStr | A Constrained ICA-EMD Model for Group Level fMRI Analysis |
title_full_unstemmed | A Constrained ICA-EMD Model for Group Level fMRI Analysis |
title_short | A Constrained ICA-EMD Model for Group Level fMRI Analysis |
title_sort | constrained ica-emd model for group level fmri analysis |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7175031/ https://www.ncbi.nlm.nih.gov/pubmed/32351349 http://dx.doi.org/10.3389/fnins.2020.00221 |
work_keys_str_mv | AT weinsimon aconstrainedicaemdmodelforgrouplevelfmrianalysis AT tomeanam aconstrainedicaemdmodelforgrouplevelfmrianalysis AT goldhackermarkus aconstrainedicaemdmodelforgrouplevelfmrianalysis AT greenleemarkw aconstrainedicaemdmodelforgrouplevelfmrianalysis AT langelmarw aconstrainedicaemdmodelforgrouplevelfmrianalysis AT weinsimon constrainedicaemdmodelforgrouplevelfmrianalysis AT tomeanam constrainedicaemdmodelforgrouplevelfmrianalysis AT goldhackermarkus constrainedicaemdmodelforgrouplevelfmrianalysis AT greenleemarkw constrainedicaemdmodelforgrouplevelfmrianalysis AT langelmarw constrainedicaemdmodelforgrouplevelfmrianalysis |