Cargando…
Climbing Escher’s stairs: A way to approximate stability landscapes in multidimensional systems
Stability landscapes are useful for understanding the properties of dynamical systems. These landscapes can be calculated from the system’s dynamical equations using the physical concept of scalar potential. Unfortunately, it is well known that for most systems with two or more state variables such...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7176285/ https://www.ncbi.nlm.nih.gov/pubmed/32275714 http://dx.doi.org/10.1371/journal.pcbi.1007788 |
_version_ | 1783524991671730176 |
---|---|
author | Rodríguez-Sánchez, Pablo van Nes, Egbert H. Scheffer, Marten |
author_facet | Rodríguez-Sánchez, Pablo van Nes, Egbert H. Scheffer, Marten |
author_sort | Rodríguez-Sánchez, Pablo |
collection | PubMed |
description | Stability landscapes are useful for understanding the properties of dynamical systems. These landscapes can be calculated from the system’s dynamical equations using the physical concept of scalar potential. Unfortunately, it is well known that for most systems with two or more state variables such potentials do not exist. Here we use an analogy with art to provide an accessible explanation of why this happens and briefly review some of the possible alternatives. Additionally, we introduce a novel and simple computational tool that implements one of those solutions: the decomposition of the differential equations into a gradient term, that has an associated potential, and a non-gradient term, that lacks it. In regions of the state space where the magnitude of the non-gradient term is small compared to the gradient part, we use the gradient term to approximate the potential as quasi-potential. The non-gradient to gradient ratio can be used to estimate the local error introduced by our approximation. Both the algorithm and a ready-to-use implementation in the form of an R package are provided. |
format | Online Article Text |
id | pubmed-7176285 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-71762852020-04-29 Climbing Escher’s stairs: A way to approximate stability landscapes in multidimensional systems Rodríguez-Sánchez, Pablo van Nes, Egbert H. Scheffer, Marten PLoS Comput Biol Research Article Stability landscapes are useful for understanding the properties of dynamical systems. These landscapes can be calculated from the system’s dynamical equations using the physical concept of scalar potential. Unfortunately, it is well known that for most systems with two or more state variables such potentials do not exist. Here we use an analogy with art to provide an accessible explanation of why this happens and briefly review some of the possible alternatives. Additionally, we introduce a novel and simple computational tool that implements one of those solutions: the decomposition of the differential equations into a gradient term, that has an associated potential, and a non-gradient term, that lacks it. In regions of the state space where the magnitude of the non-gradient term is small compared to the gradient part, we use the gradient term to approximate the potential as quasi-potential. The non-gradient to gradient ratio can be used to estimate the local error introduced by our approximation. Both the algorithm and a ready-to-use implementation in the form of an R package are provided. Public Library of Science 2020-04-10 /pmc/articles/PMC7176285/ /pubmed/32275714 http://dx.doi.org/10.1371/journal.pcbi.1007788 Text en © 2020 Rodríguez-Sánchez et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Rodríguez-Sánchez, Pablo van Nes, Egbert H. Scheffer, Marten Climbing Escher’s stairs: A way to approximate stability landscapes in multidimensional systems |
title | Climbing Escher’s stairs: A way to approximate stability landscapes in multidimensional systems |
title_full | Climbing Escher’s stairs: A way to approximate stability landscapes in multidimensional systems |
title_fullStr | Climbing Escher’s stairs: A way to approximate stability landscapes in multidimensional systems |
title_full_unstemmed | Climbing Escher’s stairs: A way to approximate stability landscapes in multidimensional systems |
title_short | Climbing Escher’s stairs: A way to approximate stability landscapes in multidimensional systems |
title_sort | climbing escher’s stairs: a way to approximate stability landscapes in multidimensional systems |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7176285/ https://www.ncbi.nlm.nih.gov/pubmed/32275714 http://dx.doi.org/10.1371/journal.pcbi.1007788 |
work_keys_str_mv | AT rodriguezsanchezpablo climbingeschersstairsawaytoapproximatestabilitylandscapesinmultidimensionalsystems AT vannesegberth climbingeschersstairsawaytoapproximatestabilitylandscapesinmultidimensionalsystems AT scheffermarten climbingeschersstairsawaytoapproximatestabilitylandscapesinmultidimensionalsystems |