Cargando…

Measuring Efficiency of Semi-automated Brain Tumor Segmentation by Simulating User Interaction

Traditionally, radiologists have crudely quantified tumor extent by measuring the longest and shortest dimension by dragging a cursor between opposite boundary points across a single image rather than full segmentation of the volumetric extent. For algorithmic-based volumetric segmentation, the degr...

Descripción completa

Detalles Bibliográficos
Autores principales: Gering, David, Kotrotsou, Aikaterini, Young-Moxon, Brett, Miller, Neal, Avery, Aaron, Kohli, Lisa, Knapp, Haley, Hoffman, Jeffrey, Chylla, Roger, Peitzman, Linda, Mackie, Thomas R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7177174/
https://www.ncbi.nlm.nih.gov/pubmed/32372938
http://dx.doi.org/10.3389/fncom.2020.00032
_version_ 1783525163003805696
author Gering, David
Kotrotsou, Aikaterini
Young-Moxon, Brett
Miller, Neal
Avery, Aaron
Kohli, Lisa
Knapp, Haley
Hoffman, Jeffrey
Chylla, Roger
Peitzman, Linda
Mackie, Thomas R.
author_facet Gering, David
Kotrotsou, Aikaterini
Young-Moxon, Brett
Miller, Neal
Avery, Aaron
Kohli, Lisa
Knapp, Haley
Hoffman, Jeffrey
Chylla, Roger
Peitzman, Linda
Mackie, Thomas R.
author_sort Gering, David
collection PubMed
description Traditionally, radiologists have crudely quantified tumor extent by measuring the longest and shortest dimension by dragging a cursor between opposite boundary points across a single image rather than full segmentation of the volumetric extent. For algorithmic-based volumetric segmentation, the degree of radiologist experiential involvement varies from confirming a fully automated segmentation, to making a single drag on an image to initiate semi-automated segmentation, to making multiple drags and clicks on multiple images during interactive segmentation. An experiment was designed to test an algorithm that allows various levels of interaction. Given the ground-truth of the BraTS training data, which delimits the brain tumors of 285 patients on multi-spectral MR, a computer simulation mimicked the process that a radiologist would follow to perform segmentation with real-time interaction. Clicks and drags were placed only where needed in response to the deviation between real-time segmentation results and assumed radiologist's goal, as provided by the ground-truth. Results of accuracy for various levels of interaction are presented along with estimated elapsed time, in order to measure efficiency. Average total elapsed time, including loading the study through confirming 3D contours, was 46 s.
format Online
Article
Text
id pubmed-7177174
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-71771742020-05-05 Measuring Efficiency of Semi-automated Brain Tumor Segmentation by Simulating User Interaction Gering, David Kotrotsou, Aikaterini Young-Moxon, Brett Miller, Neal Avery, Aaron Kohli, Lisa Knapp, Haley Hoffman, Jeffrey Chylla, Roger Peitzman, Linda Mackie, Thomas R. Front Comput Neurosci Neuroscience Traditionally, radiologists have crudely quantified tumor extent by measuring the longest and shortest dimension by dragging a cursor between opposite boundary points across a single image rather than full segmentation of the volumetric extent. For algorithmic-based volumetric segmentation, the degree of radiologist experiential involvement varies from confirming a fully automated segmentation, to making a single drag on an image to initiate semi-automated segmentation, to making multiple drags and clicks on multiple images during interactive segmentation. An experiment was designed to test an algorithm that allows various levels of interaction. Given the ground-truth of the BraTS training data, which delimits the brain tumors of 285 patients on multi-spectral MR, a computer simulation mimicked the process that a radiologist would follow to perform segmentation with real-time interaction. Clicks and drags were placed only where needed in response to the deviation between real-time segmentation results and assumed radiologist's goal, as provided by the ground-truth. Results of accuracy for various levels of interaction are presented along with estimated elapsed time, in order to measure efficiency. Average total elapsed time, including loading the study through confirming 3D contours, was 46 s. Frontiers Media S.A. 2020-04-16 /pmc/articles/PMC7177174/ /pubmed/32372938 http://dx.doi.org/10.3389/fncom.2020.00032 Text en Copyright © 2020 Gering, Kotrotsou, Young-Moxon, Miller, Avery, Kohli, Knapp, Hoffman, Chylla, Peitzman and Mackie. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Gering, David
Kotrotsou, Aikaterini
Young-Moxon, Brett
Miller, Neal
Avery, Aaron
Kohli, Lisa
Knapp, Haley
Hoffman, Jeffrey
Chylla, Roger
Peitzman, Linda
Mackie, Thomas R.
Measuring Efficiency of Semi-automated Brain Tumor Segmentation by Simulating User Interaction
title Measuring Efficiency of Semi-automated Brain Tumor Segmentation by Simulating User Interaction
title_full Measuring Efficiency of Semi-automated Brain Tumor Segmentation by Simulating User Interaction
title_fullStr Measuring Efficiency of Semi-automated Brain Tumor Segmentation by Simulating User Interaction
title_full_unstemmed Measuring Efficiency of Semi-automated Brain Tumor Segmentation by Simulating User Interaction
title_short Measuring Efficiency of Semi-automated Brain Tumor Segmentation by Simulating User Interaction
title_sort measuring efficiency of semi-automated brain tumor segmentation by simulating user interaction
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7177174/
https://www.ncbi.nlm.nih.gov/pubmed/32372938
http://dx.doi.org/10.3389/fncom.2020.00032
work_keys_str_mv AT geringdavid measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT kotrotsouaikaterini measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT youngmoxonbrett measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT millerneal measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT averyaaron measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT kohlilisa measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT knapphaley measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT hoffmanjeffrey measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT chyllaroger measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT peitzmanlinda measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction
AT mackiethomasr measuringefficiencyofsemiautomatedbraintumorsegmentationbysimulatinguserinteraction