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Chromosomal Signatures Corroborate the Phylogenetic Relationships within Akodontini (Rodentia, Sigmodontinae)

Comparative chromosome-painting analysis among highly rearranged karyotypes of Sigmodontinae rodents (Rodentia, Cricetidae) detects conserved syntenic blocks, which are proposed as chromosomal signatures and can be used as phylogenetic markers. In the Akodontini tribe, the molecular topology (Cytb a...

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Autores principales: Oliveira da Silva, Willam, Malcher, Stella Miranda, Pereira, Adenilson Leão, Pieczarka, Julio Cesar, Ferguson-Smith, Malcolm Andrew, O’Brien, Patricia Caroline Mary, Mendes-Oliveira, Ana Cristina, Geise, Lena, Nagamachi, Cleusa Yoshiko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7177754/
https://www.ncbi.nlm.nih.gov/pubmed/32244440
http://dx.doi.org/10.3390/ijms21072415
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author Oliveira da Silva, Willam
Malcher, Stella Miranda
Pereira, Adenilson Leão
Pieczarka, Julio Cesar
Ferguson-Smith, Malcolm Andrew
O’Brien, Patricia Caroline Mary
Mendes-Oliveira, Ana Cristina
Geise, Lena
Nagamachi, Cleusa Yoshiko
author_facet Oliveira da Silva, Willam
Malcher, Stella Miranda
Pereira, Adenilson Leão
Pieczarka, Julio Cesar
Ferguson-Smith, Malcolm Andrew
O’Brien, Patricia Caroline Mary
Mendes-Oliveira, Ana Cristina
Geise, Lena
Nagamachi, Cleusa Yoshiko
author_sort Oliveira da Silva, Willam
collection PubMed
description Comparative chromosome-painting analysis among highly rearranged karyotypes of Sigmodontinae rodents (Rodentia, Cricetidae) detects conserved syntenic blocks, which are proposed as chromosomal signatures and can be used as phylogenetic markers. In the Akodontini tribe, the molecular topology (Cytb and/or IRBP) shows five low-supported clades (divisions: “Akodon”, “Bibimys”, “Blarinomys”, “Oxymycterus”, and “Scapteromys”) within two high-supported major clades (clade A: “Akodon”, “Bibimys”, and “Oxymycterus”; clade B: “Blarinomys” and “Scapteromys”). Here, we examine the chromosomal signatures of the Akodontini tribe by using Hylaeamys megacephalus (HME) probes to study the karyotypes of Oxymycterus amazonicus (2n = 54, FN = 64) and Blarinomys breviceps (2n = 28, FN = 50), and compare these data with those from other taxa investigated using the same set of probes. We strategically employ the chromosomal signatures to elucidate phylogenetic relationships among the Akodontini. When we follow the evolution of chromosomal signature states, we find that the cytogenetic data corroborate the current molecular relationships in clade A nodes. We discuss the distinct events that caused karyotypic variability in the Oxymycterus and Blarinomys genera. In addition, we propose that Blarinomys may constitute a species complex, and that the taxonomy should be revised to better delimit the geographical boundaries and their taxonomic status.
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spelling pubmed-71777542020-04-28 Chromosomal Signatures Corroborate the Phylogenetic Relationships within Akodontini (Rodentia, Sigmodontinae) Oliveira da Silva, Willam Malcher, Stella Miranda Pereira, Adenilson Leão Pieczarka, Julio Cesar Ferguson-Smith, Malcolm Andrew O’Brien, Patricia Caroline Mary Mendes-Oliveira, Ana Cristina Geise, Lena Nagamachi, Cleusa Yoshiko Int J Mol Sci Article Comparative chromosome-painting analysis among highly rearranged karyotypes of Sigmodontinae rodents (Rodentia, Cricetidae) detects conserved syntenic blocks, which are proposed as chromosomal signatures and can be used as phylogenetic markers. In the Akodontini tribe, the molecular topology (Cytb and/or IRBP) shows five low-supported clades (divisions: “Akodon”, “Bibimys”, “Blarinomys”, “Oxymycterus”, and “Scapteromys”) within two high-supported major clades (clade A: “Akodon”, “Bibimys”, and “Oxymycterus”; clade B: “Blarinomys” and “Scapteromys”). Here, we examine the chromosomal signatures of the Akodontini tribe by using Hylaeamys megacephalus (HME) probes to study the karyotypes of Oxymycterus amazonicus (2n = 54, FN = 64) and Blarinomys breviceps (2n = 28, FN = 50), and compare these data with those from other taxa investigated using the same set of probes. We strategically employ the chromosomal signatures to elucidate phylogenetic relationships among the Akodontini. When we follow the evolution of chromosomal signature states, we find that the cytogenetic data corroborate the current molecular relationships in clade A nodes. We discuss the distinct events that caused karyotypic variability in the Oxymycterus and Blarinomys genera. In addition, we propose that Blarinomys may constitute a species complex, and that the taxonomy should be revised to better delimit the geographical boundaries and their taxonomic status. MDPI 2020-03-31 /pmc/articles/PMC7177754/ /pubmed/32244440 http://dx.doi.org/10.3390/ijms21072415 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Oliveira da Silva, Willam
Malcher, Stella Miranda
Pereira, Adenilson Leão
Pieczarka, Julio Cesar
Ferguson-Smith, Malcolm Andrew
O’Brien, Patricia Caroline Mary
Mendes-Oliveira, Ana Cristina
Geise, Lena
Nagamachi, Cleusa Yoshiko
Chromosomal Signatures Corroborate the Phylogenetic Relationships within Akodontini (Rodentia, Sigmodontinae)
title Chromosomal Signatures Corroborate the Phylogenetic Relationships within Akodontini (Rodentia, Sigmodontinae)
title_full Chromosomal Signatures Corroborate the Phylogenetic Relationships within Akodontini (Rodentia, Sigmodontinae)
title_fullStr Chromosomal Signatures Corroborate the Phylogenetic Relationships within Akodontini (Rodentia, Sigmodontinae)
title_full_unstemmed Chromosomal Signatures Corroborate the Phylogenetic Relationships within Akodontini (Rodentia, Sigmodontinae)
title_short Chromosomal Signatures Corroborate the Phylogenetic Relationships within Akodontini (Rodentia, Sigmodontinae)
title_sort chromosomal signatures corroborate the phylogenetic relationships within akodontini (rodentia, sigmodontinae)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7177754/
https://www.ncbi.nlm.nih.gov/pubmed/32244440
http://dx.doi.org/10.3390/ijms21072415
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