IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evo...

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Autores principales: Minh, Bui Quang, Schmidt, Heiko A, Chernomor, Olga, Schrempf, Dominik, Woodhams, Michael D, von Haeseler, Arndt, Lanfear, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Resources
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7182206/
https://www.ncbi.nlm.nih.gov/pubmed/32011700
http://dx.doi.org/10.1093/molbev/msaa015
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author Minh, Bui Quang
Schmidt, Heiko A
Chernomor, Olga
Schrempf, Dominik
Woodhams, Michael D
von Haeseler, Arndt
Lanfear, Robert
author_facet Minh, Bui Quang
Schmidt, Heiko A
Chernomor, Olga
Schrempf, Dominik
Woodhams, Michael D
von Haeseler, Arndt
Lanfear, Robert
author_sort Minh, Bui Quang
collection PubMed
description IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.
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spelling pubmed-71822062020-04-29 IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era Minh, Bui Quang Schmidt, Heiko A Chernomor, Olga Schrempf, Dominik Woodhams, Michael D von Haeseler, Arndt Lanfear, Robert Mol Biol Evol Resources IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software. Oxford University Press 2020-05 2020-02-03 /pmc/articles/PMC7182206/ /pubmed/32011700 http://dx.doi.org/10.1093/molbev/msaa015 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Resources
Minh, Bui Quang
Schmidt, Heiko A
Chernomor, Olga
Schrempf, Dominik
Woodhams, Michael D
von Haeseler, Arndt
Lanfear, Robert
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
title IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
title_full IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
title_fullStr IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
title_full_unstemmed IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
title_short IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
title_sort iq-tree 2: new models and efficient methods for phylogenetic inference in the genomic era
topic Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7182206/
https://www.ncbi.nlm.nih.gov/pubmed/32011700
http://dx.doi.org/10.1093/molbev/msaa015
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