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Chaos game representation dataset of SARS-CoV-2 genome
As of April 16, 2020, the novel coronavirus disease (called COVID-19) spread to more than 185 countries/regions with more than 142,000 deaths and more than 2,000,000 confirmed cases. In the bioinformatics area, one of the crucial points is the analysis of the virus nucleotide sequences using approac...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7182522/ https://www.ncbi.nlm.nih.gov/pubmed/32341946 http://dx.doi.org/10.1016/j.dib.2020.105618 |
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author | Barbosa, Raquel de M. Fernandes, Marcelo A.C. |
author_facet | Barbosa, Raquel de M. Fernandes, Marcelo A.C. |
author_sort | Barbosa, Raquel de M. |
collection | PubMed |
description | As of April 16, 2020, the novel coronavirus disease (called COVID-19) spread to more than 185 countries/regions with more than 142,000 deaths and more than 2,000,000 confirmed cases. In the bioinformatics area, one of the crucial points is the analysis of the virus nucleotide sequences using approaches such as data stream, digital signal processing, and machine learning techniques and algorithms. However, to make feasible this approach, it is necessary to transform the nucleotide sequences string to numerical values representation. Thus, the dataset provides a chaos game representation (CGR) of SARS-CoV-2 virus nucleotide sequences. The dataset provides the CGR of 100 instances of SARS-CoV-2 virus, 11540 instances of other viruses from the Virus-Host DB dataset, and three instances of Riboviria viruses from NCBI (Betacoronavirus RaTG13, bat-SL-CoVZC45, and bat-SL-CoVZXC21). |
format | Online Article Text |
id | pubmed-7182522 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-71825222020-04-27 Chaos game representation dataset of SARS-CoV-2 genome Barbosa, Raquel de M. Fernandes, Marcelo A.C. Data Brief Biochemistry, Genetics and Molecular Biology As of April 16, 2020, the novel coronavirus disease (called COVID-19) spread to more than 185 countries/regions with more than 142,000 deaths and more than 2,000,000 confirmed cases. In the bioinformatics area, one of the crucial points is the analysis of the virus nucleotide sequences using approaches such as data stream, digital signal processing, and machine learning techniques and algorithms. However, to make feasible this approach, it is necessary to transform the nucleotide sequences string to numerical values representation. Thus, the dataset provides a chaos game representation (CGR) of SARS-CoV-2 virus nucleotide sequences. The dataset provides the CGR of 100 instances of SARS-CoV-2 virus, 11540 instances of other viruses from the Virus-Host DB dataset, and three instances of Riboviria viruses from NCBI (Betacoronavirus RaTG13, bat-SL-CoVZC45, and bat-SL-CoVZXC21). Elsevier 2020-04-25 /pmc/articles/PMC7182522/ /pubmed/32341946 http://dx.doi.org/10.1016/j.dib.2020.105618 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biochemistry, Genetics and Molecular Biology Barbosa, Raquel de M. Fernandes, Marcelo A.C. Chaos game representation dataset of SARS-CoV-2 genome |
title | Chaos game representation dataset of SARS-CoV-2 genome |
title_full | Chaos game representation dataset of SARS-CoV-2 genome |
title_fullStr | Chaos game representation dataset of SARS-CoV-2 genome |
title_full_unstemmed | Chaos game representation dataset of SARS-CoV-2 genome |
title_short | Chaos game representation dataset of SARS-CoV-2 genome |
title_sort | chaos game representation dataset of sars-cov-2 genome |
topic | Biochemistry, Genetics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7182522/ https://www.ncbi.nlm.nih.gov/pubmed/32341946 http://dx.doi.org/10.1016/j.dib.2020.105618 |
work_keys_str_mv | AT barbosaraqueldem chaosgamerepresentationdatasetofsarscov2genome AT fernandesmarceloac chaosgamerepresentationdatasetofsarscov2genome |