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Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard
Environmental DNA (eDNA) is usually defined as genetic material obtained directly from environmental samples, such as soil, water, or ice. Coupled to DNA metabarcoding, eDNA is a powerful tool in biodiversity assessments. Results from eDNA approach provided valuable insights to the studies of past a...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7182674/ https://www.ncbi.nlm.nih.gov/pubmed/32346576 http://dx.doi.org/10.1016/j.dib.2020.105553 |
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author | Pawłowska, Joanna Pawlowski, Jan Zajączkowski, Marek |
author_facet | Pawłowska, Joanna Pawlowski, Jan Zajączkowski, Marek |
author_sort | Pawłowska, Joanna |
collection | PubMed |
description | Environmental DNA (eDNA) is usually defined as genetic material obtained directly from environmental samples, such as soil, water, or ice. Coupled to DNA metabarcoding, eDNA is a powerful tool in biodiversity assessments. Results from eDNA approach provided valuable insights to the studies of past and contemporary biodiversity in terrestrial and aquatic environments. However, the state and fate of eDNA are still investigated and the knowledge about the form of eDNA (i.e., extracellular vs. intracellular) or the DNA degradation under different environmental conditions is limited. Here, we tackle this issue by analyzing foraminiferal sedimentary DNA (sedDNA) from different size fractions of marine sediments: >500 µm, 500–100 µm, 100–63 µm, and < 63 µm. Surface sediment samples were collected at 15 sampling stations located in the Svalbard archipelago. Sequences of the foraminifera-specific 37f region were generated using Illumina technology. The presented data may be used as a reference for a wide range of eDNA-based studies, including biomonitoring and biodiversity assessments across time and space. |
format | Online Article Text |
id | pubmed-7182674 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-71826742020-04-28 Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard Pawłowska, Joanna Pawlowski, Jan Zajączkowski, Marek Data Brief Biochemistry, Genetics and Molecular Biology Environmental DNA (eDNA) is usually defined as genetic material obtained directly from environmental samples, such as soil, water, or ice. Coupled to DNA metabarcoding, eDNA is a powerful tool in biodiversity assessments. Results from eDNA approach provided valuable insights to the studies of past and contemporary biodiversity in terrestrial and aquatic environments. However, the state and fate of eDNA are still investigated and the knowledge about the form of eDNA (i.e., extracellular vs. intracellular) or the DNA degradation under different environmental conditions is limited. Here, we tackle this issue by analyzing foraminiferal sedimentary DNA (sedDNA) from different size fractions of marine sediments: >500 µm, 500–100 µm, 100–63 µm, and < 63 µm. Surface sediment samples were collected at 15 sampling stations located in the Svalbard archipelago. Sequences of the foraminifera-specific 37f region were generated using Illumina technology. The presented data may be used as a reference for a wide range of eDNA-based studies, including biomonitoring and biodiversity assessments across time and space. Elsevier 2020-04-18 /pmc/articles/PMC7182674/ /pubmed/32346576 http://dx.doi.org/10.1016/j.dib.2020.105553 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biochemistry, Genetics and Molecular Biology Pawłowska, Joanna Pawlowski, Jan Zajączkowski, Marek Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard |
title | Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard |
title_full | Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard |
title_fullStr | Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard |
title_full_unstemmed | Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard |
title_short | Dataset of foraminiferal sedimentary DNA (sedDNA) sequences from Svalbard |
title_sort | dataset of foraminiferal sedimentary dna (seddna) sequences from svalbard |
topic | Biochemistry, Genetics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7182674/ https://www.ncbi.nlm.nih.gov/pubmed/32346576 http://dx.doi.org/10.1016/j.dib.2020.105553 |
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