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Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce
BACKGROUND: Genomic selection (GS) or genomic prediction is considered as a promising approach to accelerate tree breeding and increase genetic gain by shortening breeding cycle, but the efforts to develop routines for operational breeding are so far limited. We investigated the predictive ability (...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7183120/ https://www.ncbi.nlm.nih.gov/pubmed/32334511 http://dx.doi.org/10.1186/s12864-020-6737-3 |
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author | Zhou, Linghua Chen, Zhiqiang Olsson, Lars Grahn, Thomas Karlsson, Bo Wu, Harry X. Lundqvist, Sven-Olof García-Gil, María Rosario |
author_facet | Zhou, Linghua Chen, Zhiqiang Olsson, Lars Grahn, Thomas Karlsson, Bo Wu, Harry X. Lundqvist, Sven-Olof García-Gil, María Rosario |
author_sort | Zhou, Linghua |
collection | PubMed |
description | BACKGROUND: Genomic selection (GS) or genomic prediction is considered as a promising approach to accelerate tree breeding and increase genetic gain by shortening breeding cycle, but the efforts to develop routines for operational breeding are so far limited. We investigated the predictive ability (PA) of GS based on 484 progeny trees from 62 half-sib families in Norway spruce (Picea abies (L.) Karst.) for wood density, modulus of elasticity (MOE) and microfibril angle (MFA) measured with SilviScan, as well as for measurements on standing trees by Pilodyn and Hitman instruments. RESULTS: GS predictive abilities were comparable with those based on pedigree-based prediction. Marker-based PAs were generally 25–30% higher for traits density, MFA and MOE measured with SilviScan than for their respective standing tree-based method which measured with Pilodyn and Hitman. Prediction accuracy (PC) of the standing tree-based methods were similar or even higher than increment core-based method. 78–95% of the maximal PAs of density, MFA and MOE obtained from coring to the pith at high age were reached by using data possible to obtain by drilling 3–5 rings towards the pith at tree age 10–12. CONCLUSIONS: This study indicates standing tree-based measurements is a cost-effective alternative method for GS. PA of GS methods were comparable with those pedigree-based prediction. The highest PAs were reached with at least 80–90% of the dataset used as training set. Selection for trait density could be conducted at an earlier age than for MFA and MOE. Operational breeding can also be optimized by training the model at an earlier age or using 3 to 5 outermost rings at tree age 10 to 12 years, thereby shortening the cycle and reducing the impact on the tree. |
format | Online Article Text |
id | pubmed-7183120 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-71831202020-04-28 Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce Zhou, Linghua Chen, Zhiqiang Olsson, Lars Grahn, Thomas Karlsson, Bo Wu, Harry X. Lundqvist, Sven-Olof García-Gil, María Rosario BMC Genomics Research Article BACKGROUND: Genomic selection (GS) or genomic prediction is considered as a promising approach to accelerate tree breeding and increase genetic gain by shortening breeding cycle, but the efforts to develop routines for operational breeding are so far limited. We investigated the predictive ability (PA) of GS based on 484 progeny trees from 62 half-sib families in Norway spruce (Picea abies (L.) Karst.) for wood density, modulus of elasticity (MOE) and microfibril angle (MFA) measured with SilviScan, as well as for measurements on standing trees by Pilodyn and Hitman instruments. RESULTS: GS predictive abilities were comparable with those based on pedigree-based prediction. Marker-based PAs were generally 25–30% higher for traits density, MFA and MOE measured with SilviScan than for their respective standing tree-based method which measured with Pilodyn and Hitman. Prediction accuracy (PC) of the standing tree-based methods were similar or even higher than increment core-based method. 78–95% of the maximal PAs of density, MFA and MOE obtained from coring to the pith at high age were reached by using data possible to obtain by drilling 3–5 rings towards the pith at tree age 10–12. CONCLUSIONS: This study indicates standing tree-based measurements is a cost-effective alternative method for GS. PA of GS methods were comparable with those pedigree-based prediction. The highest PAs were reached with at least 80–90% of the dataset used as training set. Selection for trait density could be conducted at an earlier age than for MFA and MOE. Operational breeding can also be optimized by training the model at an earlier age or using 3 to 5 outermost rings at tree age 10 to 12 years, thereby shortening the cycle and reducing the impact on the tree. BioMed Central 2020-04-25 /pmc/articles/PMC7183120/ /pubmed/32334511 http://dx.doi.org/10.1186/s12864-020-6737-3 Text en © The Author(s). 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Zhou, Linghua Chen, Zhiqiang Olsson, Lars Grahn, Thomas Karlsson, Bo Wu, Harry X. Lundqvist, Sven-Olof García-Gil, María Rosario Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce |
title | Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce |
title_full | Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce |
title_fullStr | Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce |
title_full_unstemmed | Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce |
title_short | Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce |
title_sort | effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of norway spruce |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7183120/ https://www.ncbi.nlm.nih.gov/pubmed/32334511 http://dx.doi.org/10.1186/s12864-020-6737-3 |
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