Cargando…

Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases

Fluorophore-assisted carbohydrate electrophoresis (FACE) enables detection and quantification of degradation products from artificial and natural chitin substrates such as 4-NP-(GlcNAc)(2), (GlcNAc)(4) and colloidal chitin. The FACE method has been improved by our group for analysis of chitooligosac...

Descripción completa

Detalles Bibliográficos
Autores principales: Kimura, Masahiro, Umeyama, Takatoshi, Wakita, Satoshi, Okawa, Kazuaki, Sakaguchi, Masayoshi, Matoska, Vaclav, Bauer, Peter O., Oyama, Fumitaka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7183225/
https://www.ncbi.nlm.nih.gov/pubmed/32346528
http://dx.doi.org/10.1016/j.mex.2020.100881
_version_ 1783526383343894528
author Kimura, Masahiro
Umeyama, Takatoshi
Wakita, Satoshi
Okawa, Kazuaki
Sakaguchi, Masayoshi
Matoska, Vaclav
Bauer, Peter O.
Oyama, Fumitaka
author_facet Kimura, Masahiro
Umeyama, Takatoshi
Wakita, Satoshi
Okawa, Kazuaki
Sakaguchi, Masayoshi
Matoska, Vaclav
Bauer, Peter O.
Oyama, Fumitaka
author_sort Kimura, Masahiro
collection PubMed
description Fluorophore-assisted carbohydrate electrophoresis (FACE) enables detection and quantification of degradation products from artificial and natural chitin substrates such as 4-NP-(GlcNAc)(2), (GlcNAc)(4) and colloidal chitin. The FACE method has been improved by our group for analysis of chitooligosaccharides in the presence of several buffer systems commonly used in the biochemical evaluation of chitinolytic activities of enzymes at pH 2.0–8.0. FACE is a very sensitive technique detecting picomolar amounts of molecules. We optimized the detection conditions as follows: exposure type, precision; sensitivity, high resolution; exposure time, 5 s. We evaluated the (GlcNAc)(2) levels using a standard curve that allows chitooligosaccharides quantification at up to 10 nmol amounts. Using the method presented here, the chitinolytic properties of different chitinases can be compared directly. Serratia • FACE is a simple and quantitative method. • Our improved procedure enables the quantification of chitooligosaccharides produced by chitinases at pH 2.0–8.0. • FACE is able to quantify chitooligosaccharides at up to 10 nmol amounts.
format Online
Article
Text
id pubmed-7183225
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-71832252020-04-28 Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases Kimura, Masahiro Umeyama, Takatoshi Wakita, Satoshi Okawa, Kazuaki Sakaguchi, Masayoshi Matoska, Vaclav Bauer, Peter O. Oyama, Fumitaka MethodsX Biochemistry, Genetics and Molecular Biology Fluorophore-assisted carbohydrate electrophoresis (FACE) enables detection and quantification of degradation products from artificial and natural chitin substrates such as 4-NP-(GlcNAc)(2), (GlcNAc)(4) and colloidal chitin. The FACE method has been improved by our group for analysis of chitooligosaccharides in the presence of several buffer systems commonly used in the biochemical evaluation of chitinolytic activities of enzymes at pH 2.0–8.0. FACE is a very sensitive technique detecting picomolar amounts of molecules. We optimized the detection conditions as follows: exposure type, precision; sensitivity, high resolution; exposure time, 5 s. We evaluated the (GlcNAc)(2) levels using a standard curve that allows chitooligosaccharides quantification at up to 10 nmol amounts. Using the method presented here, the chitinolytic properties of different chitinases can be compared directly. Serratia • FACE is a simple and quantitative method. • Our improved procedure enables the quantification of chitooligosaccharides produced by chitinases at pH 2.0–8.0. • FACE is able to quantify chitooligosaccharides at up to 10 nmol amounts. Elsevier 2020-04-18 /pmc/articles/PMC7183225/ /pubmed/32346528 http://dx.doi.org/10.1016/j.mex.2020.100881 Text en © 2020 The Author(s). Published by Elsevier B.V. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Kimura, Masahiro
Umeyama, Takatoshi
Wakita, Satoshi
Okawa, Kazuaki
Sakaguchi, Masayoshi
Matoska, Vaclav
Bauer, Peter O.
Oyama, Fumitaka
Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases
title Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases
title_full Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases
title_fullStr Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases
title_full_unstemmed Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases
title_short Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases
title_sort quantification of chitooligosaccharides by face method: determination of combinatory effects of mouse chitinases
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7183225/
https://www.ncbi.nlm.nih.gov/pubmed/32346528
http://dx.doi.org/10.1016/j.mex.2020.100881
work_keys_str_mv AT kimuramasahiro quantificationofchitooligosaccharidesbyfacemethoddeterminationofcombinatoryeffectsofmousechitinases
AT umeyamatakatoshi quantificationofchitooligosaccharidesbyfacemethoddeterminationofcombinatoryeffectsofmousechitinases
AT wakitasatoshi quantificationofchitooligosaccharidesbyfacemethoddeterminationofcombinatoryeffectsofmousechitinases
AT okawakazuaki quantificationofchitooligosaccharidesbyfacemethoddeterminationofcombinatoryeffectsofmousechitinases
AT sakaguchimasayoshi quantificationofchitooligosaccharidesbyfacemethoddeterminationofcombinatoryeffectsofmousechitinases
AT matoskavaclav quantificationofchitooligosaccharidesbyfacemethoddeterminationofcombinatoryeffectsofmousechitinases
AT bauerpetero quantificationofchitooligosaccharidesbyfacemethoddeterminationofcombinatoryeffectsofmousechitinases
AT oyamafumitaka quantificationofchitooligosaccharidesbyfacemethoddeterminationofcombinatoryeffectsofmousechitinases