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Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases
Fluorophore-assisted carbohydrate electrophoresis (FACE) enables detection and quantification of degradation products from artificial and natural chitin substrates such as 4-NP-(GlcNAc)(2), (GlcNAc)(4) and colloidal chitin. The FACE method has been improved by our group for analysis of chitooligosac...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7183225/ https://www.ncbi.nlm.nih.gov/pubmed/32346528 http://dx.doi.org/10.1016/j.mex.2020.100881 |
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author | Kimura, Masahiro Umeyama, Takatoshi Wakita, Satoshi Okawa, Kazuaki Sakaguchi, Masayoshi Matoska, Vaclav Bauer, Peter O. Oyama, Fumitaka |
author_facet | Kimura, Masahiro Umeyama, Takatoshi Wakita, Satoshi Okawa, Kazuaki Sakaguchi, Masayoshi Matoska, Vaclav Bauer, Peter O. Oyama, Fumitaka |
author_sort | Kimura, Masahiro |
collection | PubMed |
description | Fluorophore-assisted carbohydrate electrophoresis (FACE) enables detection and quantification of degradation products from artificial and natural chitin substrates such as 4-NP-(GlcNAc)(2), (GlcNAc)(4) and colloidal chitin. The FACE method has been improved by our group for analysis of chitooligosaccharides in the presence of several buffer systems commonly used in the biochemical evaluation of chitinolytic activities of enzymes at pH 2.0–8.0. FACE is a very sensitive technique detecting picomolar amounts of molecules. We optimized the detection conditions as follows: exposure type, precision; sensitivity, high resolution; exposure time, 5 s. We evaluated the (GlcNAc)(2) levels using a standard curve that allows chitooligosaccharides quantification at up to 10 nmol amounts. Using the method presented here, the chitinolytic properties of different chitinases can be compared directly. Serratia • FACE is a simple and quantitative method. • Our improved procedure enables the quantification of chitooligosaccharides produced by chitinases at pH 2.0–8.0. • FACE is able to quantify chitooligosaccharides at up to 10 nmol amounts. |
format | Online Article Text |
id | pubmed-7183225 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-71832252020-04-28 Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases Kimura, Masahiro Umeyama, Takatoshi Wakita, Satoshi Okawa, Kazuaki Sakaguchi, Masayoshi Matoska, Vaclav Bauer, Peter O. Oyama, Fumitaka MethodsX Biochemistry, Genetics and Molecular Biology Fluorophore-assisted carbohydrate electrophoresis (FACE) enables detection and quantification of degradation products from artificial and natural chitin substrates such as 4-NP-(GlcNAc)(2), (GlcNAc)(4) and colloidal chitin. The FACE method has been improved by our group for analysis of chitooligosaccharides in the presence of several buffer systems commonly used in the biochemical evaluation of chitinolytic activities of enzymes at pH 2.0–8.0. FACE is a very sensitive technique detecting picomolar amounts of molecules. We optimized the detection conditions as follows: exposure type, precision; sensitivity, high resolution; exposure time, 5 s. We evaluated the (GlcNAc)(2) levels using a standard curve that allows chitooligosaccharides quantification at up to 10 nmol amounts. Using the method presented here, the chitinolytic properties of different chitinases can be compared directly. Serratia • FACE is a simple and quantitative method. • Our improved procedure enables the quantification of chitooligosaccharides produced by chitinases at pH 2.0–8.0. • FACE is able to quantify chitooligosaccharides at up to 10 nmol amounts. Elsevier 2020-04-18 /pmc/articles/PMC7183225/ /pubmed/32346528 http://dx.doi.org/10.1016/j.mex.2020.100881 Text en © 2020 The Author(s). Published by Elsevier B.V. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biochemistry, Genetics and Molecular Biology Kimura, Masahiro Umeyama, Takatoshi Wakita, Satoshi Okawa, Kazuaki Sakaguchi, Masayoshi Matoska, Vaclav Bauer, Peter O. Oyama, Fumitaka Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases |
title | Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases |
title_full | Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases |
title_fullStr | Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases |
title_full_unstemmed | Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases |
title_short | Quantification of chitooligosaccharides by FACE method: Determination of combinatory effects of mouse chitinases |
title_sort | quantification of chitooligosaccharides by face method: determination of combinatory effects of mouse chitinases |
topic | Biochemistry, Genetics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7183225/ https://www.ncbi.nlm.nih.gov/pubmed/32346528 http://dx.doi.org/10.1016/j.mex.2020.100881 |
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