Cargando…

Analysing the phenotype development of soybean plants using low-cost 3D reconstruction

With the development of digital agriculture, 3D reconstruction technology has been widely used to analyse crop phenotypes. To date, most research on 3D reconstruction of field crops has been limited to analysis of population characteristics. Therefore, in this study, we propose a method based on low...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhu, Rongsheng, Sun, Kai, Yan, Zhuangzhuang, Yan, Xuehui, Yu, Jianglin, Shi, Jia, Hu, Zhenbang, Jiang, Hongwei, Xin, Dawei, Zhang, Zhanguo, Li, Yang, Qi, Zhaoming, Liu, Chunyan, Wu, Xiaoxia, Chen, Qingshan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7184763/
https://www.ncbi.nlm.nih.gov/pubmed/32341432
http://dx.doi.org/10.1038/s41598-020-63720-2
_version_ 1783526650233749504
author Zhu, Rongsheng
Sun, Kai
Yan, Zhuangzhuang
Yan, Xuehui
Yu, Jianglin
Shi, Jia
Hu, Zhenbang
Jiang, Hongwei
Xin, Dawei
Zhang, Zhanguo
Li, Yang
Qi, Zhaoming
Liu, Chunyan
Wu, Xiaoxia
Chen, Qingshan
author_facet Zhu, Rongsheng
Sun, Kai
Yan, Zhuangzhuang
Yan, Xuehui
Yu, Jianglin
Shi, Jia
Hu, Zhenbang
Jiang, Hongwei
Xin, Dawei
Zhang, Zhanguo
Li, Yang
Qi, Zhaoming
Liu, Chunyan
Wu, Xiaoxia
Chen, Qingshan
author_sort Zhu, Rongsheng
collection PubMed
description With the development of digital agriculture, 3D reconstruction technology has been widely used to analyse crop phenotypes. To date, most research on 3D reconstruction of field crops has been limited to analysis of population characteristics. Therefore, in this study, we propose a method based on low-cost 3D reconstruction technology to analyse the phenotype development during the whole growth period. Based on the phenotypic parameters extracted from the 3D reconstruction model, we identified the “phenotypic fingerprint” of the relevant phenotypes throughout the whole growth period of soybean plants and completed analysis of the plant growth patterns using a logistic growth model. The phenotypic fingerprint showed that, before the R3 period, the growth of the five varieties was similar. After the R5 period, the differences among the five cultivars gradually increased. This result indicates that the phenotypic fingerprint can accurately reveal the patterns of phenotypic changes. The logistic growth model of soybean plants revealed the time points of maximum growth rate of the five soybean varieties, and this information can provide a basis for developing guidelines for water and fertiliser application to crops. These findings will provide effective guidance for breeding and field management of soybean and other crops.
format Online
Article
Text
id pubmed-7184763
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-71847632020-05-04 Analysing the phenotype development of soybean plants using low-cost 3D reconstruction Zhu, Rongsheng Sun, Kai Yan, Zhuangzhuang Yan, Xuehui Yu, Jianglin Shi, Jia Hu, Zhenbang Jiang, Hongwei Xin, Dawei Zhang, Zhanguo Li, Yang Qi, Zhaoming Liu, Chunyan Wu, Xiaoxia Chen, Qingshan Sci Rep Article With the development of digital agriculture, 3D reconstruction technology has been widely used to analyse crop phenotypes. To date, most research on 3D reconstruction of field crops has been limited to analysis of population characteristics. Therefore, in this study, we propose a method based on low-cost 3D reconstruction technology to analyse the phenotype development during the whole growth period. Based on the phenotypic parameters extracted from the 3D reconstruction model, we identified the “phenotypic fingerprint” of the relevant phenotypes throughout the whole growth period of soybean plants and completed analysis of the plant growth patterns using a logistic growth model. The phenotypic fingerprint showed that, before the R3 period, the growth of the five varieties was similar. After the R5 period, the differences among the five cultivars gradually increased. This result indicates that the phenotypic fingerprint can accurately reveal the patterns of phenotypic changes. The logistic growth model of soybean plants revealed the time points of maximum growth rate of the five soybean varieties, and this information can provide a basis for developing guidelines for water and fertiliser application to crops. These findings will provide effective guidance for breeding and field management of soybean and other crops. Nature Publishing Group UK 2020-04-27 /pmc/articles/PMC7184763/ /pubmed/32341432 http://dx.doi.org/10.1038/s41598-020-63720-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Zhu, Rongsheng
Sun, Kai
Yan, Zhuangzhuang
Yan, Xuehui
Yu, Jianglin
Shi, Jia
Hu, Zhenbang
Jiang, Hongwei
Xin, Dawei
Zhang, Zhanguo
Li, Yang
Qi, Zhaoming
Liu, Chunyan
Wu, Xiaoxia
Chen, Qingshan
Analysing the phenotype development of soybean plants using low-cost 3D reconstruction
title Analysing the phenotype development of soybean plants using low-cost 3D reconstruction
title_full Analysing the phenotype development of soybean plants using low-cost 3D reconstruction
title_fullStr Analysing the phenotype development of soybean plants using low-cost 3D reconstruction
title_full_unstemmed Analysing the phenotype development of soybean plants using low-cost 3D reconstruction
title_short Analysing the phenotype development of soybean plants using low-cost 3D reconstruction
title_sort analysing the phenotype development of soybean plants using low-cost 3d reconstruction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7184763/
https://www.ncbi.nlm.nih.gov/pubmed/32341432
http://dx.doi.org/10.1038/s41598-020-63720-2
work_keys_str_mv AT zhurongsheng analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT sunkai analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT yanzhuangzhuang analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT yanxuehui analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT yujianglin analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT shijia analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT huzhenbang analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT jianghongwei analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT xindawei analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT zhangzhanguo analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT liyang analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT qizhaoming analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT liuchunyan analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT wuxiaoxia analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction
AT chenqingshan analysingthephenotypedevelopmentofsoybeanplantsusinglowcost3dreconstruction