Cargando…

Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma

Methylation of DNA, RNA or protein is a reversible modification. The proteins and genes that regulate this modification can be a candidate target for tumor therapy. However, the characteristics of methyltransferase related genes in glioma remain obscure. In this study, we systematically analyzed the...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Ying, Liu, Yuqing, Liu, Hanjie, Zhao, Zheng, Wu, Fan, Zeng, Fan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185060/
https://www.ncbi.nlm.nih.gov/pubmed/32373523
http://dx.doi.org/10.3389/fonc.2020.00508
_version_ 1783526692974755840
author Zhang, Ying
Liu, Yuqing
Liu, Hanjie
Zhao, Zheng
Wu, Fan
Zeng, Fan
author_facet Zhang, Ying
Liu, Yuqing
Liu, Hanjie
Zhao, Zheng
Wu, Fan
Zeng, Fan
author_sort Zhang, Ying
collection PubMed
description Methylation of DNA, RNA or protein is a reversible modification. The proteins and genes that regulate this modification can be a candidate target for tumor therapy. However, the characteristics of methyltransferase related genes in glioma remain obscure. In this study, we systematically analyzed the relationship between methyltransferase-related genes expression profiles and outcomes in glioma patients based on The Cancer Genome Atlas and Chinese Glioma Genome Atlas RNA sequencing datasets. Consensus clustering identified two robust groups with significantly different pathological features and prognosis. Then a methyltransferase-related risk signature was built by a Cox proportional hazards model with elastic net penalty. Moreover, the risk score is associated with patients' clinical and molecular features and can be used as an independent prognostic indicator for patients with glioma. Furthermore, genes associated with the high-risk group were involved in various aspects of the malignant progression of glioma via Gene Ontology analysis and Gene Set Enrichment Analysis. In summary, our study identified a methyltransferase-related risk signature for predicting the prognosis of gliomas.
format Online
Article
Text
id pubmed-7185060
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-71850602020-05-05 Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma Zhang, Ying Liu, Yuqing Liu, Hanjie Zhao, Zheng Wu, Fan Zeng, Fan Front Oncol Oncology Methylation of DNA, RNA or protein is a reversible modification. The proteins and genes that regulate this modification can be a candidate target for tumor therapy. However, the characteristics of methyltransferase related genes in glioma remain obscure. In this study, we systematically analyzed the relationship between methyltransferase-related genes expression profiles and outcomes in glioma patients based on The Cancer Genome Atlas and Chinese Glioma Genome Atlas RNA sequencing datasets. Consensus clustering identified two robust groups with significantly different pathological features and prognosis. Then a methyltransferase-related risk signature was built by a Cox proportional hazards model with elastic net penalty. Moreover, the risk score is associated with patients' clinical and molecular features and can be used as an independent prognostic indicator for patients with glioma. Furthermore, genes associated with the high-risk group were involved in various aspects of the malignant progression of glioma via Gene Ontology analysis and Gene Set Enrichment Analysis. In summary, our study identified a methyltransferase-related risk signature for predicting the prognosis of gliomas. Frontiers Media S.A. 2020-04-20 /pmc/articles/PMC7185060/ /pubmed/32373523 http://dx.doi.org/10.3389/fonc.2020.00508 Text en Copyright © 2020 Zhang, Liu, Liu, Zhao, Wu and Zeng. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Zhang, Ying
Liu, Yuqing
Liu, Hanjie
Zhao, Zheng
Wu, Fan
Zeng, Fan
Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma
title Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma
title_full Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma
title_fullStr Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma
title_full_unstemmed Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma
title_short Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma
title_sort clinical and biological significances of a methyltransferase-related signature in diffuse glioma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185060/
https://www.ncbi.nlm.nih.gov/pubmed/32373523
http://dx.doi.org/10.3389/fonc.2020.00508
work_keys_str_mv AT zhangying clinicalandbiologicalsignificancesofamethyltransferaserelatedsignatureindiffuseglioma
AT liuyuqing clinicalandbiologicalsignificancesofamethyltransferaserelatedsignatureindiffuseglioma
AT liuhanjie clinicalandbiologicalsignificancesofamethyltransferaserelatedsignatureindiffuseglioma
AT zhaozheng clinicalandbiologicalsignificancesofamethyltransferaserelatedsignatureindiffuseglioma
AT wufan clinicalandbiologicalsignificancesofamethyltransferaserelatedsignatureindiffuseglioma
AT zengfan clinicalandbiologicalsignificancesofamethyltransferaserelatedsignatureindiffuseglioma