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Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma
Methylation of DNA, RNA or protein is a reversible modification. The proteins and genes that regulate this modification can be a candidate target for tumor therapy. However, the characteristics of methyltransferase related genes in glioma remain obscure. In this study, we systematically analyzed the...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185060/ https://www.ncbi.nlm.nih.gov/pubmed/32373523 http://dx.doi.org/10.3389/fonc.2020.00508 |
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author | Zhang, Ying Liu, Yuqing Liu, Hanjie Zhao, Zheng Wu, Fan Zeng, Fan |
author_facet | Zhang, Ying Liu, Yuqing Liu, Hanjie Zhao, Zheng Wu, Fan Zeng, Fan |
author_sort | Zhang, Ying |
collection | PubMed |
description | Methylation of DNA, RNA or protein is a reversible modification. The proteins and genes that regulate this modification can be a candidate target for tumor therapy. However, the characteristics of methyltransferase related genes in glioma remain obscure. In this study, we systematically analyzed the relationship between methyltransferase-related genes expression profiles and outcomes in glioma patients based on The Cancer Genome Atlas and Chinese Glioma Genome Atlas RNA sequencing datasets. Consensus clustering identified two robust groups with significantly different pathological features and prognosis. Then a methyltransferase-related risk signature was built by a Cox proportional hazards model with elastic net penalty. Moreover, the risk score is associated with patients' clinical and molecular features and can be used as an independent prognostic indicator for patients with glioma. Furthermore, genes associated with the high-risk group were involved in various aspects of the malignant progression of glioma via Gene Ontology analysis and Gene Set Enrichment Analysis. In summary, our study identified a methyltransferase-related risk signature for predicting the prognosis of gliomas. |
format | Online Article Text |
id | pubmed-7185060 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-71850602020-05-05 Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma Zhang, Ying Liu, Yuqing Liu, Hanjie Zhao, Zheng Wu, Fan Zeng, Fan Front Oncol Oncology Methylation of DNA, RNA or protein is a reversible modification. The proteins and genes that regulate this modification can be a candidate target for tumor therapy. However, the characteristics of methyltransferase related genes in glioma remain obscure. In this study, we systematically analyzed the relationship between methyltransferase-related genes expression profiles and outcomes in glioma patients based on The Cancer Genome Atlas and Chinese Glioma Genome Atlas RNA sequencing datasets. Consensus clustering identified two robust groups with significantly different pathological features and prognosis. Then a methyltransferase-related risk signature was built by a Cox proportional hazards model with elastic net penalty. Moreover, the risk score is associated with patients' clinical and molecular features and can be used as an independent prognostic indicator for patients with glioma. Furthermore, genes associated with the high-risk group were involved in various aspects of the malignant progression of glioma via Gene Ontology analysis and Gene Set Enrichment Analysis. In summary, our study identified a methyltransferase-related risk signature for predicting the prognosis of gliomas. Frontiers Media S.A. 2020-04-20 /pmc/articles/PMC7185060/ /pubmed/32373523 http://dx.doi.org/10.3389/fonc.2020.00508 Text en Copyright © 2020 Zhang, Liu, Liu, Zhao, Wu and Zeng. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Zhang, Ying Liu, Yuqing Liu, Hanjie Zhao, Zheng Wu, Fan Zeng, Fan Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma |
title | Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma |
title_full | Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma |
title_fullStr | Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma |
title_full_unstemmed | Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma |
title_short | Clinical and Biological Significances of a Methyltransferase-Related Signature in Diffuse Glioma |
title_sort | clinical and biological significances of a methyltransferase-related signature in diffuse glioma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185060/ https://www.ncbi.nlm.nih.gov/pubmed/32373523 http://dx.doi.org/10.3389/fonc.2020.00508 |
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