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ETS2 and microRNA-155 regulate the pathogenesis of heart failure through targeting and regulating GPR18 expression
Heart failure (HF) is a global pandemic cardiovascular disease with increasing prevalence, but the pathogenesis remains to be elucidated. The present study aimed to investigate the underlying mechanism in heart failure (HF) using bioinformatics and experimental validation. A HF-associated dataset GS...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185148/ https://www.ncbi.nlm.nih.gov/pubmed/32346408 http://dx.doi.org/10.3892/etm.2020.8642 |
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author | Li, Jing Su, Hongling Zhu, Yan Cao, Yunshan Ma, Xuming |
author_facet | Li, Jing Su, Hongling Zhu, Yan Cao, Yunshan Ma, Xuming |
author_sort | Li, Jing |
collection | PubMed |
description | Heart failure (HF) is a global pandemic cardiovascular disease with increasing prevalence, but the pathogenesis remains to be elucidated. The present study aimed to investigate the underlying mechanism in heart failure (HF) using bioinformatics and experimental validation. A HF-associated dataset GSE84796 was downloaded from the Gene Expression Omnibus database and differentially expressed genes (DEGs) were screened for using Bayes method in the Limma package. Kyoto Encyclopedia of Genes and Genomes pathway analysis was used to perform pathway enrichment analysis of these DEGs using The Database for Annotation, Visualization and Integrated Discovery. A protein-protein interaction (PPI) network of DEG-encoded proteins was subsequently constructed using the Search tool for the Retrieval of Interacting Genes/Proteins, and a transcription factor (TF)/miRNA-target network was constructed according to the WEB-based Gene SeT AnaLysis Tookit. The expression levels of microRNA (miRNA/miR)-155, G-protein coupled receptor 18 (GRP18) and E26 transformation-specific transcription factor 2 (ETS2) were analyzed in clinical HF samples, and functional validations were performed in H9c2 (2-1) cells. A total of 419 DEGs were identified, including 366 upregulated genes and 53 downregulated genes. The upregulated DEGs were significantly enriched in the pathways of ‘cytokine-cytokine receptor interaction’, ‘natural killer cell mediated cytotoxicity’ and ‘primary immunodeficiency’. A total of two functional modules were identified in the PPI network: Module A was enriched in 3 KEGG pathways and module B was enriched in 15 KEGG pathways. Furthermore, a total of three miRNAs and eight TFs were identified in the TF/miRNA-target network. Specifically, GPR18 was discovered to be targeted by both ETS2 and miR-155. Clinical validation revealed that the expression levels of miR-155 were significantly decreased in the HF samples, whereas the expression levels of ETS2 and GPR18 were significantly increased in HF samples. In conclusion, the present study suggested that GPR18 may be a target of ETS2 and miR-155, and miR-155 may regulate cell viability and apoptosis in H9c2 (2-1) cells through targeting and regulating GPR18. |
format | Online Article Text |
id | pubmed-7185148 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-71851482020-04-28 ETS2 and microRNA-155 regulate the pathogenesis of heart failure through targeting and regulating GPR18 expression Li, Jing Su, Hongling Zhu, Yan Cao, Yunshan Ma, Xuming Exp Ther Med Articles Heart failure (HF) is a global pandemic cardiovascular disease with increasing prevalence, but the pathogenesis remains to be elucidated. The present study aimed to investigate the underlying mechanism in heart failure (HF) using bioinformatics and experimental validation. A HF-associated dataset GSE84796 was downloaded from the Gene Expression Omnibus database and differentially expressed genes (DEGs) were screened for using Bayes method in the Limma package. Kyoto Encyclopedia of Genes and Genomes pathway analysis was used to perform pathway enrichment analysis of these DEGs using The Database for Annotation, Visualization and Integrated Discovery. A protein-protein interaction (PPI) network of DEG-encoded proteins was subsequently constructed using the Search tool for the Retrieval of Interacting Genes/Proteins, and a transcription factor (TF)/miRNA-target network was constructed according to the WEB-based Gene SeT AnaLysis Tookit. The expression levels of microRNA (miRNA/miR)-155, G-protein coupled receptor 18 (GRP18) and E26 transformation-specific transcription factor 2 (ETS2) were analyzed in clinical HF samples, and functional validations were performed in H9c2 (2-1) cells. A total of 419 DEGs were identified, including 366 upregulated genes and 53 downregulated genes. The upregulated DEGs were significantly enriched in the pathways of ‘cytokine-cytokine receptor interaction’, ‘natural killer cell mediated cytotoxicity’ and ‘primary immunodeficiency’. A total of two functional modules were identified in the PPI network: Module A was enriched in 3 KEGG pathways and module B was enriched in 15 KEGG pathways. Furthermore, a total of three miRNAs and eight TFs were identified in the TF/miRNA-target network. Specifically, GPR18 was discovered to be targeted by both ETS2 and miR-155. Clinical validation revealed that the expression levels of miR-155 were significantly decreased in the HF samples, whereas the expression levels of ETS2 and GPR18 were significantly increased in HF samples. In conclusion, the present study suggested that GPR18 may be a target of ETS2 and miR-155, and miR-155 may regulate cell viability and apoptosis in H9c2 (2-1) cells through targeting and regulating GPR18. D.A. Spandidos 2020-06 2020-04-03 /pmc/articles/PMC7185148/ /pubmed/32346408 http://dx.doi.org/10.3892/etm.2020.8642 Text en Copyright: © Li et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Li, Jing Su, Hongling Zhu, Yan Cao, Yunshan Ma, Xuming ETS2 and microRNA-155 regulate the pathogenesis of heart failure through targeting and regulating GPR18 expression |
title | ETS2 and microRNA-155 regulate the pathogenesis of heart failure through targeting and regulating GPR18 expression |
title_full | ETS2 and microRNA-155 regulate the pathogenesis of heart failure through targeting and regulating GPR18 expression |
title_fullStr | ETS2 and microRNA-155 regulate the pathogenesis of heart failure through targeting and regulating GPR18 expression |
title_full_unstemmed | ETS2 and microRNA-155 regulate the pathogenesis of heart failure through targeting and regulating GPR18 expression |
title_short | ETS2 and microRNA-155 regulate the pathogenesis of heart failure through targeting and regulating GPR18 expression |
title_sort | ets2 and microrna-155 regulate the pathogenesis of heart failure through targeting and regulating gpr18 expression |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185148/ https://www.ncbi.nlm.nih.gov/pubmed/32346408 http://dx.doi.org/10.3892/etm.2020.8642 |
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