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Spatial approximations of network-based individual level infectious disease models

Often, when modeling infectious disease spread, the complex network through which the disease propagates is approximated by simplified spatial information. Here, we simulate epidemic spread through various contact networks and fit spatial-based models in a Bayesian framework using Markov chain Monte...

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Detalles Bibliográficos
Autores principales: Bifolchi, Nadia, Deardon, Rob, Feng, Zeny
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Published by Elsevier Ltd. 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185451/
https://www.ncbi.nlm.nih.gov/pubmed/23973181
http://dx.doi.org/10.1016/j.sste.2013.07.001
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author Bifolchi, Nadia
Deardon, Rob
Feng, Zeny
author_facet Bifolchi, Nadia
Deardon, Rob
Feng, Zeny
author_sort Bifolchi, Nadia
collection PubMed
description Often, when modeling infectious disease spread, the complex network through which the disease propagates is approximated by simplified spatial information. Here, we simulate epidemic spread through various contact networks and fit spatial-based models in a Bayesian framework using Markov chain Monte Carlo methods. These spatial models are individual-level models which account for the spatio-temporal dynamics of infectious disease. The focus here is on choosing a spatial model which best predicts the true probabilities of infection, as well as determining under which conditions such spatial models fail. Spatial models tend to predict infection probability reasonably well when disease spread is propagated through contact networks in which contacts are only within a certain distance of each other. If contacts exist over long distances, the spatial models tend to perform worse when compared to the network model.
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spelling pubmed-71854512020-04-28 Spatial approximations of network-based individual level infectious disease models Bifolchi, Nadia Deardon, Rob Feng, Zeny Spat Spatiotemporal Epidemiol Article Often, when modeling infectious disease spread, the complex network through which the disease propagates is approximated by simplified spatial information. Here, we simulate epidemic spread through various contact networks and fit spatial-based models in a Bayesian framework using Markov chain Monte Carlo methods. These spatial models are individual-level models which account for the spatio-temporal dynamics of infectious disease. The focus here is on choosing a spatial model which best predicts the true probabilities of infection, as well as determining under which conditions such spatial models fail. Spatial models tend to predict infection probability reasonably well when disease spread is propagated through contact networks in which contacts are only within a certain distance of each other. If contacts exist over long distances, the spatial models tend to perform worse when compared to the network model. Published by Elsevier Ltd. 2013-09 2013-07-22 /pmc/articles/PMC7185451/ /pubmed/23973181 http://dx.doi.org/10.1016/j.sste.2013.07.001 Text en Crown copyright © 2013 Published by Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Bifolchi, Nadia
Deardon, Rob
Feng, Zeny
Spatial approximations of network-based individual level infectious disease models
title Spatial approximations of network-based individual level infectious disease models
title_full Spatial approximations of network-based individual level infectious disease models
title_fullStr Spatial approximations of network-based individual level infectious disease models
title_full_unstemmed Spatial approximations of network-based individual level infectious disease models
title_short Spatial approximations of network-based individual level infectious disease models
title_sort spatial approximations of network-based individual level infectious disease models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185451/
https://www.ncbi.nlm.nih.gov/pubmed/23973181
http://dx.doi.org/10.1016/j.sste.2013.07.001
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