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Spatial approximations of network-based individual level infectious disease models
Often, when modeling infectious disease spread, the complex network through which the disease propagates is approximated by simplified spatial information. Here, we simulate epidemic spread through various contact networks and fit spatial-based models in a Bayesian framework using Markov chain Monte...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Published by Elsevier Ltd.
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185451/ https://www.ncbi.nlm.nih.gov/pubmed/23973181 http://dx.doi.org/10.1016/j.sste.2013.07.001 |
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author | Bifolchi, Nadia Deardon, Rob Feng, Zeny |
author_facet | Bifolchi, Nadia Deardon, Rob Feng, Zeny |
author_sort | Bifolchi, Nadia |
collection | PubMed |
description | Often, when modeling infectious disease spread, the complex network through which the disease propagates is approximated by simplified spatial information. Here, we simulate epidemic spread through various contact networks and fit spatial-based models in a Bayesian framework using Markov chain Monte Carlo methods. These spatial models are individual-level models which account for the spatio-temporal dynamics of infectious disease. The focus here is on choosing a spatial model which best predicts the true probabilities of infection, as well as determining under which conditions such spatial models fail. Spatial models tend to predict infection probability reasonably well when disease spread is propagated through contact networks in which contacts are only within a certain distance of each other. If contacts exist over long distances, the spatial models tend to perform worse when compared to the network model. |
format | Online Article Text |
id | pubmed-7185451 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Published by Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-71854512020-04-28 Spatial approximations of network-based individual level infectious disease models Bifolchi, Nadia Deardon, Rob Feng, Zeny Spat Spatiotemporal Epidemiol Article Often, when modeling infectious disease spread, the complex network through which the disease propagates is approximated by simplified spatial information. Here, we simulate epidemic spread through various contact networks and fit spatial-based models in a Bayesian framework using Markov chain Monte Carlo methods. These spatial models are individual-level models which account for the spatio-temporal dynamics of infectious disease. The focus here is on choosing a spatial model which best predicts the true probabilities of infection, as well as determining under which conditions such spatial models fail. Spatial models tend to predict infection probability reasonably well when disease spread is propagated through contact networks in which contacts are only within a certain distance of each other. If contacts exist over long distances, the spatial models tend to perform worse when compared to the network model. Published by Elsevier Ltd. 2013-09 2013-07-22 /pmc/articles/PMC7185451/ /pubmed/23973181 http://dx.doi.org/10.1016/j.sste.2013.07.001 Text en Crown copyright © 2013 Published by Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Bifolchi, Nadia Deardon, Rob Feng, Zeny Spatial approximations of network-based individual level infectious disease models |
title | Spatial approximations of network-based individual level infectious disease models |
title_full | Spatial approximations of network-based individual level infectious disease models |
title_fullStr | Spatial approximations of network-based individual level infectious disease models |
title_full_unstemmed | Spatial approximations of network-based individual level infectious disease models |
title_short | Spatial approximations of network-based individual level infectious disease models |
title_sort | spatial approximations of network-based individual level infectious disease models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185451/ https://www.ncbi.nlm.nih.gov/pubmed/23973181 http://dx.doi.org/10.1016/j.sste.2013.07.001 |
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