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Impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach

Simulating epidemics in metapopulations is a challenging issue due to the large demographic and geographic scales to incorporate. Traditional epidemiologic models choose to simplify reality by ignoring both the spatial distribution of populations and possible intrapopulation heterogeneities, whereas...

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Detalles Bibliográficos
Autores principales: Vincenot, Christian Ernest, Moriya, Kazuyuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185514/
https://www.ncbi.nlm.nih.gov/pubmed/32362804
http://dx.doi.org/10.1016/j.ecoinf.2011.04.002
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author Vincenot, Christian Ernest
Moriya, Kazuyuki
author_facet Vincenot, Christian Ernest
Moriya, Kazuyuki
author_sort Vincenot, Christian Ernest
collection PubMed
description Simulating epidemics in metapopulations is a challenging issue due to the large demographic and geographic scales to incorporate. Traditional epidemiologic models choose to simplify reality by ignoring both the spatial distribution of populations and possible intrapopulation heterogeneities, whereas more recent solutions based on Individual-Based Modeling (IBM) can achieve high precision but are costly to compute and analyze. We introduce here an original alternative to these two approaches, which relies on a novel hybrid modeling framework and incarnates a multiscale view of epidemics. The model relies on a technical fusion of two modeling paradigms: System Dynamics (SD) and Individual-Based Modeling. It features an aggregated representation of local outbreaks rendered in SD, and at the same time a spatially-explicit simulation of the spread between populations simulated in IBM. We first present the design of this deterministic model, show that it can reproduce the dynamics of real resurgent epidemics, and infer from the sensitivity of several spatial factors absent in compartmental models the importance of having large-scale epidemiological processes represented inside of an explicitly disaggregated metapopulation. After discussing the implications of results obtained from simulation runs and the applicability of this model, we conclude that SD–IB hybrid modeling can be an interesting choice to represent epidemics in a spatially-explicit way without necessarily taking into account individual heterogeneities, and therefore it can be considered as a valuable alternative to simple compartmental models suffering from detrimental effects of the well-mixed assumption.
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spelling pubmed-71855142020-04-28 Impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach Vincenot, Christian Ernest Moriya, Kazuyuki Ecol Inform Article Simulating epidemics in metapopulations is a challenging issue due to the large demographic and geographic scales to incorporate. Traditional epidemiologic models choose to simplify reality by ignoring both the spatial distribution of populations and possible intrapopulation heterogeneities, whereas more recent solutions based on Individual-Based Modeling (IBM) can achieve high precision but are costly to compute and analyze. We introduce here an original alternative to these two approaches, which relies on a novel hybrid modeling framework and incarnates a multiscale view of epidemics. The model relies on a technical fusion of two modeling paradigms: System Dynamics (SD) and Individual-Based Modeling. It features an aggregated representation of local outbreaks rendered in SD, and at the same time a spatially-explicit simulation of the spread between populations simulated in IBM. We first present the design of this deterministic model, show that it can reproduce the dynamics of real resurgent epidemics, and infer from the sensitivity of several spatial factors absent in compartmental models the importance of having large-scale epidemiological processes represented inside of an explicitly disaggregated metapopulation. After discussing the implications of results obtained from simulation runs and the applicability of this model, we conclude that SD–IB hybrid modeling can be an interesting choice to represent epidemics in a spatially-explicit way without necessarily taking into account individual heterogeneities, and therefore it can be considered as a valuable alternative to simple compartmental models suffering from detrimental effects of the well-mixed assumption. Elsevier B.V. 2011-07 2011-04-12 /pmc/articles/PMC7185514/ /pubmed/32362804 http://dx.doi.org/10.1016/j.ecoinf.2011.04.002 Text en Copyright © 2011 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Vincenot, Christian Ernest
Moriya, Kazuyuki
Impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach
title Impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach
title_full Impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach
title_fullStr Impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach
title_full_unstemmed Impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach
title_short Impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach
title_sort impact of the topology of metapopulations on the resurgence of epidemics rendered by a new multiscale hybrid modeling approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185514/
https://www.ncbi.nlm.nih.gov/pubmed/32362804
http://dx.doi.org/10.1016/j.ecoinf.2011.04.002
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