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The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication
High oil and protein content make tetraploid peanut a leading oil and food legume. Here we report a high-quality peanut genome sequence, comprising 2.54 Gb with 20 pseudomolecules and 83,709 protein-coding gene models. We characterize gene functional groups implicated in seed size evolution, seed oi...
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Nature Publishing Group US
2019
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7188672/ https://www.ncbi.nlm.nih.gov/pubmed/31043757 http://dx.doi.org/10.1038/s41588-019-0402-2 |
| _version_ | 1783527341667909632 |
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| author | Zhuang, Weijian Chen, Hua Yang, Meng Wang, Jianping Pandey, Manish K. Zhang, Chong Chang, Wen-Chi Zhang, Liangsheng Zhang, Xingtan Tang, Ronghua Garg, Vanika Wang, Xingjun Tang, Haibao Chow, Chi-Nga Wang, Jinpeng Deng, Ye Wang, Depeng Khan, Aamir W. Yang, Qiang Cai, Tiecheng Bajaj, Prasad Wu, Kangcheng Guo, Baozhu Zhang, Xinyou Li, Jingjing Liang, Fan Hu, Jiang Liao, Boshou Liu, Shengyi Chitikineni, Annapurna Yan, Hansong Zheng, Yixiong Shan, Shihua Liu, Qinzheng Xie, Dongyang Wang, Zhenyi Khan, Shahid Ali Ali, Niaz Zhao, Chuanzhi Li, Xinguo Luo, Ziliang Zhang, Shubiao Zhuang, Ruirong Peng, Ze Wang, Shuaiyin Mamadou, Gandeka Zhuang, Yuhui Zhao, Zifan Yu, Weichang Xiong, Faqian Quan, Weipeng Yuan, Mei Li, Yu Zou, Huasong Xia, Han Zha, Li Fan, Junpeng Yu, Jigao Xie, Wenping Yuan, Jiaqing Chen, Kun Zhao, Shanshan Chu, Wenting Chen, Yuting Sun, Pengchuan Meng, Fanbo Zhuo, Tao Zhao, Yuhao Li, Chunjuan He, Guohao Zhao, Yongli Wang, Congcong Kavikishor, Polavarapu Bilhan Pan, Rong-Long Paterson, Andrew H. Wang, Xiyin Ming, Ray Varshney, Rajeev K. |
| author_facet | Zhuang, Weijian Chen, Hua Yang, Meng Wang, Jianping Pandey, Manish K. Zhang, Chong Chang, Wen-Chi Zhang, Liangsheng Zhang, Xingtan Tang, Ronghua Garg, Vanika Wang, Xingjun Tang, Haibao Chow, Chi-Nga Wang, Jinpeng Deng, Ye Wang, Depeng Khan, Aamir W. Yang, Qiang Cai, Tiecheng Bajaj, Prasad Wu, Kangcheng Guo, Baozhu Zhang, Xinyou Li, Jingjing Liang, Fan Hu, Jiang Liao, Boshou Liu, Shengyi Chitikineni, Annapurna Yan, Hansong Zheng, Yixiong Shan, Shihua Liu, Qinzheng Xie, Dongyang Wang, Zhenyi Khan, Shahid Ali Ali, Niaz Zhao, Chuanzhi Li, Xinguo Luo, Ziliang Zhang, Shubiao Zhuang, Ruirong Peng, Ze Wang, Shuaiyin Mamadou, Gandeka Zhuang, Yuhui Zhao, Zifan Yu, Weichang Xiong, Faqian Quan, Weipeng Yuan, Mei Li, Yu Zou, Huasong Xia, Han Zha, Li Fan, Junpeng Yu, Jigao Xie, Wenping Yuan, Jiaqing Chen, Kun Zhao, Shanshan Chu, Wenting Chen, Yuting Sun, Pengchuan Meng, Fanbo Zhuo, Tao Zhao, Yuhao Li, Chunjuan He, Guohao Zhao, Yongli Wang, Congcong Kavikishor, Polavarapu Bilhan Pan, Rong-Long Paterson, Andrew H. Wang, Xiyin Ming, Ray Varshney, Rajeev K. |
| author_sort | Zhuang, Weijian |
| collection | PubMed |
| description | High oil and protein content make tetraploid peanut a leading oil and food legume. Here we report a high-quality peanut genome sequence, comprising 2.54 Gb with 20 pseudomolecules and 83,709 protein-coding gene models. We characterize gene functional groups implicated in seed size evolution, seed oil content, disease resistance and symbiotic nitrogen fixation. The peanut B subgenome has more genes and general expression dominance, temporally associated with long-terminal-repeat expansion in the A subgenome that also raises questions about the A-genome progenitor. The polyploid genome provided insights into the evolution of Arachis hypogaea and other legume chromosomes. Resequencing of 52 accessions suggests that independent domestications formed peanut ecotypes. Whereas 0.42–0.47 million years ago (Ma) polyploidy constrained genetic variation, the peanut genome sequence aids mapping and candidate-gene discovery for traits such as seed size and color, foliar disease resistance and others, also providing a cornerstone for functional genomics and peanut improvement. |
| format | Online Article Text |
| id | pubmed-7188672 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2019 |
| publisher | Nature Publishing Group US |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-71886722020-05-04 The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication Zhuang, Weijian Chen, Hua Yang, Meng Wang, Jianping Pandey, Manish K. Zhang, Chong Chang, Wen-Chi Zhang, Liangsheng Zhang, Xingtan Tang, Ronghua Garg, Vanika Wang, Xingjun Tang, Haibao Chow, Chi-Nga Wang, Jinpeng Deng, Ye Wang, Depeng Khan, Aamir W. Yang, Qiang Cai, Tiecheng Bajaj, Prasad Wu, Kangcheng Guo, Baozhu Zhang, Xinyou Li, Jingjing Liang, Fan Hu, Jiang Liao, Boshou Liu, Shengyi Chitikineni, Annapurna Yan, Hansong Zheng, Yixiong Shan, Shihua Liu, Qinzheng Xie, Dongyang Wang, Zhenyi Khan, Shahid Ali Ali, Niaz Zhao, Chuanzhi Li, Xinguo Luo, Ziliang Zhang, Shubiao Zhuang, Ruirong Peng, Ze Wang, Shuaiyin Mamadou, Gandeka Zhuang, Yuhui Zhao, Zifan Yu, Weichang Xiong, Faqian Quan, Weipeng Yuan, Mei Li, Yu Zou, Huasong Xia, Han Zha, Li Fan, Junpeng Yu, Jigao Xie, Wenping Yuan, Jiaqing Chen, Kun Zhao, Shanshan Chu, Wenting Chen, Yuting Sun, Pengchuan Meng, Fanbo Zhuo, Tao Zhao, Yuhao Li, Chunjuan He, Guohao Zhao, Yongli Wang, Congcong Kavikishor, Polavarapu Bilhan Pan, Rong-Long Paterson, Andrew H. Wang, Xiyin Ming, Ray Varshney, Rajeev K. Nat Genet Article High oil and protein content make tetraploid peanut a leading oil and food legume. Here we report a high-quality peanut genome sequence, comprising 2.54 Gb with 20 pseudomolecules and 83,709 protein-coding gene models. We characterize gene functional groups implicated in seed size evolution, seed oil content, disease resistance and symbiotic nitrogen fixation. The peanut B subgenome has more genes and general expression dominance, temporally associated with long-terminal-repeat expansion in the A subgenome that also raises questions about the A-genome progenitor. The polyploid genome provided insights into the evolution of Arachis hypogaea and other legume chromosomes. Resequencing of 52 accessions suggests that independent domestications formed peanut ecotypes. Whereas 0.42–0.47 million years ago (Ma) polyploidy constrained genetic variation, the peanut genome sequence aids mapping and candidate-gene discovery for traits such as seed size and color, foliar disease resistance and others, also providing a cornerstone for functional genomics and peanut improvement. Nature Publishing Group US 2019-05-01 2019 /pmc/articles/PMC7188672/ /pubmed/31043757 http://dx.doi.org/10.1038/s41588-019-0402-2 Text en © The Author(s), under exclusive licence to Springer Nature America, Inc. 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
| spellingShingle | Article Zhuang, Weijian Chen, Hua Yang, Meng Wang, Jianping Pandey, Manish K. Zhang, Chong Chang, Wen-Chi Zhang, Liangsheng Zhang, Xingtan Tang, Ronghua Garg, Vanika Wang, Xingjun Tang, Haibao Chow, Chi-Nga Wang, Jinpeng Deng, Ye Wang, Depeng Khan, Aamir W. Yang, Qiang Cai, Tiecheng Bajaj, Prasad Wu, Kangcheng Guo, Baozhu Zhang, Xinyou Li, Jingjing Liang, Fan Hu, Jiang Liao, Boshou Liu, Shengyi Chitikineni, Annapurna Yan, Hansong Zheng, Yixiong Shan, Shihua Liu, Qinzheng Xie, Dongyang Wang, Zhenyi Khan, Shahid Ali Ali, Niaz Zhao, Chuanzhi Li, Xinguo Luo, Ziliang Zhang, Shubiao Zhuang, Ruirong Peng, Ze Wang, Shuaiyin Mamadou, Gandeka Zhuang, Yuhui Zhao, Zifan Yu, Weichang Xiong, Faqian Quan, Weipeng Yuan, Mei Li, Yu Zou, Huasong Xia, Han Zha, Li Fan, Junpeng Yu, Jigao Xie, Wenping Yuan, Jiaqing Chen, Kun Zhao, Shanshan Chu, Wenting Chen, Yuting Sun, Pengchuan Meng, Fanbo Zhuo, Tao Zhao, Yuhao Li, Chunjuan He, Guohao Zhao, Yongli Wang, Congcong Kavikishor, Polavarapu Bilhan Pan, Rong-Long Paterson, Andrew H. Wang, Xiyin Ming, Ray Varshney, Rajeev K. The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication |
| title | The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication |
| title_full | The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication |
| title_fullStr | The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication |
| title_full_unstemmed | The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication |
| title_short | The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication |
| title_sort | genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication |
| topic | Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7188672/ https://www.ncbi.nlm.nih.gov/pubmed/31043757 http://dx.doi.org/10.1038/s41588-019-0402-2 |
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