Cargando…
Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases. To make data integration more comprehensive and efficient for fission yeast research, PomBase has pion...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192550/ https://www.ncbi.nlm.nih.gov/pubmed/32353878 http://dx.doi.org/10.1093/database/baaa028 |
_version_ | 1783528030976606208 |
---|---|
author | Lock, Antonia Harris, Midori A Rutherford, Kim Hayles, Jacqueline Wood, Valerie |
author_facet | Lock, Antonia Harris, Midori A Rutherford, Kim Hayles, Jacqueline Wood, Valerie |
author_sort | Lock, Antonia |
collection | PubMed |
description | Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases. To make data integration more comprehensive and efficient for fission yeast research, PomBase has pioneered a community curation effort that engages publication authors directly in FAIR-sharing of data representing detailed biological knowledge from hypothesis-driven experiments. Canto, an intuitive online curation tool that enables biologists to describe their detailed functional data using shared ontologies, forms the core of PomBase’s system. With 8 years’ experience, and as the author response rate reaches 50%, we review community curation progress and the insights we have gained from the project. We highlight incentives and nudges we deploy to maximize participation, and summarize project outcomes, which include increased knowledge integration and dissemination as well as the unanticipated added value arising from co-curation by publication authors and professional curators. |
format | Online Article Text |
id | pubmed-7192550 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-71925502020-05-06 Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications Lock, Antonia Harris, Midori A Rutherford, Kim Hayles, Jacqueline Wood, Valerie Database (Oxford) Original Article Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases. To make data integration more comprehensive and efficient for fission yeast research, PomBase has pioneered a community curation effort that engages publication authors directly in FAIR-sharing of data representing detailed biological knowledge from hypothesis-driven experiments. Canto, an intuitive online curation tool that enables biologists to describe their detailed functional data using shared ontologies, forms the core of PomBase’s system. With 8 years’ experience, and as the author response rate reaches 50%, we review community curation progress and the insights we have gained from the project. We highlight incentives and nudges we deploy to maximize participation, and summarize project outcomes, which include increased knowledge integration and dissemination as well as the unanticipated added value arising from co-curation by publication authors and professional curators. Oxford University Press 2020-04-30 /pmc/articles/PMC7192550/ /pubmed/32353878 http://dx.doi.org/10.1093/database/baaa028 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Lock, Antonia Harris, Midori A Rutherford, Kim Hayles, Jacqueline Wood, Valerie Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications |
title | Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications |
title_full | Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications |
title_fullStr | Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications |
title_full_unstemmed | Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications |
title_short | Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications |
title_sort | community curation in pombase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192550/ https://www.ncbi.nlm.nih.gov/pubmed/32353878 http://dx.doi.org/10.1093/database/baaa028 |
work_keys_str_mv | AT lockantonia communitycurationinpombaseenablingfissionyeastexpertstoprovidedetailedstandardizedsharableannotationfromresearchpublications AT harrismidoria communitycurationinpombaseenablingfissionyeastexpertstoprovidedetailedstandardizedsharableannotationfromresearchpublications AT rutherfordkim communitycurationinpombaseenablingfissionyeastexpertstoprovidedetailedstandardizedsharableannotationfromresearchpublications AT haylesjacqueline communitycurationinpombaseenablingfissionyeastexpertstoprovidedetailedstandardizedsharableannotationfromresearchpublications AT woodvalerie communitycurationinpombaseenablingfissionyeastexpertstoprovidedetailedstandardizedsharableannotationfromresearchpublications |