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Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications

Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases. To make data integration more comprehensive and efficient for fission yeast research, PomBase has pion...

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Detalles Bibliográficos
Autores principales: Lock, Antonia, Harris, Midori A, Rutherford, Kim, Hayles, Jacqueline, Wood, Valerie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192550/
https://www.ncbi.nlm.nih.gov/pubmed/32353878
http://dx.doi.org/10.1093/database/baaa028
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author Lock, Antonia
Harris, Midori A
Rutherford, Kim
Hayles, Jacqueline
Wood, Valerie
author_facet Lock, Antonia
Harris, Midori A
Rutherford, Kim
Hayles, Jacqueline
Wood, Valerie
author_sort Lock, Antonia
collection PubMed
description Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases. To make data integration more comprehensive and efficient for fission yeast research, PomBase has pioneered a community curation effort that engages publication authors directly in FAIR-sharing of data representing detailed biological knowledge from hypothesis-driven experiments. Canto, an intuitive online curation tool that enables biologists to describe their detailed functional data using shared ontologies, forms the core of PomBase’s system. With 8 years’ experience, and as the author response rate reaches 50%, we review community curation progress and the insights we have gained from the project. We highlight incentives and nudges we deploy to maximize participation, and summarize project outcomes, which include increased knowledge integration and dissemination as well as the unanticipated added value arising from co-curation by publication authors and professional curators.
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spelling pubmed-71925502020-05-06 Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications Lock, Antonia Harris, Midori A Rutherford, Kim Hayles, Jacqueline Wood, Valerie Database (Oxford) Original Article Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases. To make data integration more comprehensive and efficient for fission yeast research, PomBase has pioneered a community curation effort that engages publication authors directly in FAIR-sharing of data representing detailed biological knowledge from hypothesis-driven experiments. Canto, an intuitive online curation tool that enables biologists to describe their detailed functional data using shared ontologies, forms the core of PomBase’s system. With 8 years’ experience, and as the author response rate reaches 50%, we review community curation progress and the insights we have gained from the project. We highlight incentives and nudges we deploy to maximize participation, and summarize project outcomes, which include increased knowledge integration and dissemination as well as the unanticipated added value arising from co-curation by publication authors and professional curators. Oxford University Press 2020-04-30 /pmc/articles/PMC7192550/ /pubmed/32353878 http://dx.doi.org/10.1093/database/baaa028 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Lock, Antonia
Harris, Midori A
Rutherford, Kim
Hayles, Jacqueline
Wood, Valerie
Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
title Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
title_full Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
title_fullStr Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
title_full_unstemmed Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
title_short Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
title_sort community curation in pombase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192550/
https://www.ncbi.nlm.nih.gov/pubmed/32353878
http://dx.doi.org/10.1093/database/baaa028
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