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The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters
8-Oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG) is the most common marker of oxidative stress and its accumulation within the genome has been associated with major human health issues such as cancer, aging, cardiovascular and neurodegenerative diseases. The characterization of the different genomic si...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192600/ https://www.ncbi.nlm.nih.gov/pubmed/32198884 http://dx.doi.org/10.1093/nar/gkaa175 |
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author | Gorini, Francesca Scala, Giovanni Di Palo, Giacomo Dellino, Gaetano Ivan Cocozza, Sergio Pelicci, Pier Giuseppe Lania, Luigi Majello, Barbara Amente, Stefano |
author_facet | Gorini, Francesca Scala, Giovanni Di Palo, Giacomo Dellino, Gaetano Ivan Cocozza, Sergio Pelicci, Pier Giuseppe Lania, Luigi Majello, Barbara Amente, Stefano |
author_sort | Gorini, Francesca |
collection | PubMed |
description | 8-Oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG) is the most common marker of oxidative stress and its accumulation within the genome has been associated with major human health issues such as cancer, aging, cardiovascular and neurodegenerative diseases. The characterization of the different genomic sites where 8-oxodG accumulates and the mechanisms underlying its formation are still poorly understood. Using OxiDIP-seq, we recently derived the genome-wide distribution of 8-oxodG in human non-tumorigenic epithelial breast cells (MCF10A). Here, we identify a subset of human promoters that accumulate 8-oxodG under steady-state condition. 8-oxodG nucleotides co-localize with double strand breaks (DSBs) at bidirectional and CG skewed promoters and their density correlate with RNA Polymerase II co-occupancy and transcription. Furthermore, by performing OxiDIP-seq in quiescent (G0) cells, we found a strong reduction of oxidatively-generated damage in the majority of 8-oxodG-positive promoters in the absence of DNA replication. Overall, our results suggest that the accumulation of 8-oxodG at gene promoters occurs through DNA replication-dependent or -independent mechanisms, with a possible contribution to the formation of cancer-associated translocation events. |
format | Online Article Text |
id | pubmed-7192600 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-71926002020-05-06 The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters Gorini, Francesca Scala, Giovanni Di Palo, Giacomo Dellino, Gaetano Ivan Cocozza, Sergio Pelicci, Pier Giuseppe Lania, Luigi Majello, Barbara Amente, Stefano Nucleic Acids Res Genome Integrity, Repair and Replication 8-Oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG) is the most common marker of oxidative stress and its accumulation within the genome has been associated with major human health issues such as cancer, aging, cardiovascular and neurodegenerative diseases. The characterization of the different genomic sites where 8-oxodG accumulates and the mechanisms underlying its formation are still poorly understood. Using OxiDIP-seq, we recently derived the genome-wide distribution of 8-oxodG in human non-tumorigenic epithelial breast cells (MCF10A). Here, we identify a subset of human promoters that accumulate 8-oxodG under steady-state condition. 8-oxodG nucleotides co-localize with double strand breaks (DSBs) at bidirectional and CG skewed promoters and their density correlate with RNA Polymerase II co-occupancy and transcription. Furthermore, by performing OxiDIP-seq in quiescent (G0) cells, we found a strong reduction of oxidatively-generated damage in the majority of 8-oxodG-positive promoters in the absence of DNA replication. Overall, our results suggest that the accumulation of 8-oxodG at gene promoters occurs through DNA replication-dependent or -independent mechanisms, with a possible contribution to the formation of cancer-associated translocation events. Oxford University Press 2020-05-07 2020-03-21 /pmc/articles/PMC7192600/ /pubmed/32198884 http://dx.doi.org/10.1093/nar/gkaa175 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Integrity, Repair and Replication Gorini, Francesca Scala, Giovanni Di Palo, Giacomo Dellino, Gaetano Ivan Cocozza, Sergio Pelicci, Pier Giuseppe Lania, Luigi Majello, Barbara Amente, Stefano The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters |
title | The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters |
title_full | The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters |
title_fullStr | The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters |
title_full_unstemmed | The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters |
title_short | The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters |
title_sort | genomic landscape of 8-oxodg reveals enrichment at specific inherently fragile promoters |
topic | Genome Integrity, Repair and Replication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192600/ https://www.ncbi.nlm.nih.gov/pubmed/32198884 http://dx.doi.org/10.1093/nar/gkaa175 |
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