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The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters

8-Oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG) is the most common marker of oxidative stress and its accumulation within the genome has been associated with major human health issues such as cancer, aging, cardiovascular and neurodegenerative diseases. The characterization of the different genomic si...

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Autores principales: Gorini, Francesca, Scala, Giovanni, Di Palo, Giacomo, Dellino, Gaetano Ivan, Cocozza, Sergio, Pelicci, Pier Giuseppe, Lania, Luigi, Majello, Barbara, Amente, Stefano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192600/
https://www.ncbi.nlm.nih.gov/pubmed/32198884
http://dx.doi.org/10.1093/nar/gkaa175
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author Gorini, Francesca
Scala, Giovanni
Di Palo, Giacomo
Dellino, Gaetano Ivan
Cocozza, Sergio
Pelicci, Pier Giuseppe
Lania, Luigi
Majello, Barbara
Amente, Stefano
author_facet Gorini, Francesca
Scala, Giovanni
Di Palo, Giacomo
Dellino, Gaetano Ivan
Cocozza, Sergio
Pelicci, Pier Giuseppe
Lania, Luigi
Majello, Barbara
Amente, Stefano
author_sort Gorini, Francesca
collection PubMed
description 8-Oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG) is the most common marker of oxidative stress and its accumulation within the genome has been associated with major human health issues such as cancer, aging, cardiovascular and neurodegenerative diseases. The characterization of the different genomic sites where 8-oxodG accumulates and the mechanisms underlying its formation are still poorly understood. Using OxiDIP-seq, we recently derived the genome-wide distribution of 8-oxodG in human non-tumorigenic epithelial breast cells (MCF10A). Here, we identify a subset of human promoters that accumulate 8-oxodG under steady-state condition. 8-oxodG nucleotides co-localize with double strand breaks (DSBs) at bidirectional and CG skewed promoters and their density correlate with RNA Polymerase II co-occupancy and transcription. Furthermore, by performing OxiDIP-seq in quiescent (G0) cells, we found a strong reduction of oxidatively-generated damage in the majority of 8-oxodG-positive promoters in the absence of DNA replication. Overall, our results suggest that the accumulation of 8-oxodG at gene promoters occurs through DNA replication-dependent or -independent mechanisms, with a possible contribution to the formation of cancer-associated translocation events.
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spelling pubmed-71926002020-05-06 The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters Gorini, Francesca Scala, Giovanni Di Palo, Giacomo Dellino, Gaetano Ivan Cocozza, Sergio Pelicci, Pier Giuseppe Lania, Luigi Majello, Barbara Amente, Stefano Nucleic Acids Res Genome Integrity, Repair and Replication 8-Oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG) is the most common marker of oxidative stress and its accumulation within the genome has been associated with major human health issues such as cancer, aging, cardiovascular and neurodegenerative diseases. The characterization of the different genomic sites where 8-oxodG accumulates and the mechanisms underlying its formation are still poorly understood. Using OxiDIP-seq, we recently derived the genome-wide distribution of 8-oxodG in human non-tumorigenic epithelial breast cells (MCF10A). Here, we identify a subset of human promoters that accumulate 8-oxodG under steady-state condition. 8-oxodG nucleotides co-localize with double strand breaks (DSBs) at bidirectional and CG skewed promoters and their density correlate with RNA Polymerase II co-occupancy and transcription. Furthermore, by performing OxiDIP-seq in quiescent (G0) cells, we found a strong reduction of oxidatively-generated damage in the majority of 8-oxodG-positive promoters in the absence of DNA replication. Overall, our results suggest that the accumulation of 8-oxodG at gene promoters occurs through DNA replication-dependent or -independent mechanisms, with a possible contribution to the formation of cancer-associated translocation events. Oxford University Press 2020-05-07 2020-03-21 /pmc/articles/PMC7192600/ /pubmed/32198884 http://dx.doi.org/10.1093/nar/gkaa175 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Integrity, Repair and Replication
Gorini, Francesca
Scala, Giovanni
Di Palo, Giacomo
Dellino, Gaetano Ivan
Cocozza, Sergio
Pelicci, Pier Giuseppe
Lania, Luigi
Majello, Barbara
Amente, Stefano
The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters
title The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters
title_full The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters
title_fullStr The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters
title_full_unstemmed The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters
title_short The genomic landscape of 8-oxodG reveals enrichment at specific inherently fragile promoters
title_sort genomic landscape of 8-oxodg reveals enrichment at specific inherently fragile promoters
topic Genome Integrity, Repair and Replication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192600/
https://www.ncbi.nlm.nih.gov/pubmed/32198884
http://dx.doi.org/10.1093/nar/gkaa175
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