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The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water
A method for studying the time dependence of the short-range molecular order of water has been proposed. In the present study, water is considered as a dynamic network between molecules at distances not exceeding 3.2 Å. The instantaneous configurations obtained with the molecular dynamics method hav...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192952/ https://www.ncbi.nlm.nih.gov/pubmed/32355196 http://dx.doi.org/10.1038/s41598-020-64210-1 |
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author | Belosludov, Vladimir Gets, Kirill Zhdanov, Ravil Malinovsky, Valery Bozhko, Yulia Belosludov, Rodion Surovtsev, Nikolay Subbotin, Oleg Kawazoe, Yoshiyuki |
author_facet | Belosludov, Vladimir Gets, Kirill Zhdanov, Ravil Malinovsky, Valery Bozhko, Yulia Belosludov, Rodion Surovtsev, Nikolay Subbotin, Oleg Kawazoe, Yoshiyuki |
author_sort | Belosludov, Vladimir |
collection | PubMed |
description | A method for studying the time dependence of the short-range molecular order of water has been proposed. In the present study, water is considered as a dynamic network between molecules at distances not exceeding 3.2 Å. The instantaneous configurations obtained with the molecular dynamics method have been sequentially analyzed. The mutual orientation of each molecule with its neighboring molecules has been studied and the interaction energy of each pair of neighbor molecules has been calculated. The majority of mutual orientation angles between molecules lie in the interval [0°; 20°]. More than 85% of the molecular pairs in each instantaneous configuration form H-bonds and the H-bond network includes all water molecules in the temperature range 233–293 K. The number of H-bonds fluctuates near the mean value and increases with decreasing temperature, and the energy of the vast majority of such bonds is much higher than the thermal energy. The interaction energy of 80% of the H-bonding molecular pairs lies in the interval [−7; −4] kcal/mol. The interaction energy of pairs that do not satisfy the H-bond angle criterion lies in the interval [−5; 4] kcal/mol; the number of such bonds does not exceed 15% and decreases with decreasing temperature. For the first time it has been found that in each instantaneous configuration the H-bond network contains built-in nanometric structural heterogeneities formed by shorter H-bonds. The fraction of molecules involved in the structural heterogeneities increases from 40% to 60% with a temperature decrease from 293 K to 233 K. Each heterogeneity has a finite lifetime and changeable structure, but they are constantly present during the entire simulation time. |
format | Online Article Text |
id | pubmed-7192952 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-71929522020-05-05 The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water Belosludov, Vladimir Gets, Kirill Zhdanov, Ravil Malinovsky, Valery Bozhko, Yulia Belosludov, Rodion Surovtsev, Nikolay Subbotin, Oleg Kawazoe, Yoshiyuki Sci Rep Article A method for studying the time dependence of the short-range molecular order of water has been proposed. In the present study, water is considered as a dynamic network between molecules at distances not exceeding 3.2 Å. The instantaneous configurations obtained with the molecular dynamics method have been sequentially analyzed. The mutual orientation of each molecule with its neighboring molecules has been studied and the interaction energy of each pair of neighbor molecules has been calculated. The majority of mutual orientation angles between molecules lie in the interval [0°; 20°]. More than 85% of the molecular pairs in each instantaneous configuration form H-bonds and the H-bond network includes all water molecules in the temperature range 233–293 K. The number of H-bonds fluctuates near the mean value and increases with decreasing temperature, and the energy of the vast majority of such bonds is much higher than the thermal energy. The interaction energy of 80% of the H-bonding molecular pairs lies in the interval [−7; −4] kcal/mol. The interaction energy of pairs that do not satisfy the H-bond angle criterion lies in the interval [−5; 4] kcal/mol; the number of such bonds does not exceed 15% and decreases with decreasing temperature. For the first time it has been found that in each instantaneous configuration the H-bond network contains built-in nanometric structural heterogeneities formed by shorter H-bonds. The fraction of molecules involved in the structural heterogeneities increases from 40% to 60% with a temperature decrease from 293 K to 233 K. Each heterogeneity has a finite lifetime and changeable structure, but they are constantly present during the entire simulation time. Nature Publishing Group UK 2020-04-30 /pmc/articles/PMC7192952/ /pubmed/32355196 http://dx.doi.org/10.1038/s41598-020-64210-1 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Belosludov, Vladimir Gets, Kirill Zhdanov, Ravil Malinovsky, Valery Bozhko, Yulia Belosludov, Rodion Surovtsev, Nikolay Subbotin, Oleg Kawazoe, Yoshiyuki The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water |
title | The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water |
title_full | The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water |
title_fullStr | The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water |
title_full_unstemmed | The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water |
title_short | The nano-structural inhomogeneity of dynamic hydrogen bond network of TIP4P/2005 water |
title_sort | nano-structural inhomogeneity of dynamic hydrogen bond network of tip4p/2005 water |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7192952/ https://www.ncbi.nlm.nih.gov/pubmed/32355196 http://dx.doi.org/10.1038/s41598-020-64210-1 |
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