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XynDZ5: A New Thermostable GH10 Xylanase

Xylanolytic enzymes have a broad range of applications in industrial biotechnology as biocatalytic components of various processes and products, such as food additives, bakery products, coffee extraction, agricultural silage and functional foods. An increasing market demand has driven the growing in...

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Autores principales: Zarafeta, Dimitra, Galanopoulou, Anastasia P., Leni, Maria Evangelia, Kaili, Stavroula I., Chegkazi, Magda S., Chrysina, Evangelia D., Kolisis, Fragiskos N., Hatzinikolaou, Dimitris G., Skretas, Georgios
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7193231/
https://www.ncbi.nlm.nih.gov/pubmed/32390953
http://dx.doi.org/10.3389/fmicb.2020.00545
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author Zarafeta, Dimitra
Galanopoulou, Anastasia P.
Leni, Maria Evangelia
Kaili, Stavroula I.
Chegkazi, Magda S.
Chrysina, Evangelia D.
Kolisis, Fragiskos N.
Hatzinikolaou, Dimitris G.
Skretas, Georgios
author_facet Zarafeta, Dimitra
Galanopoulou, Anastasia P.
Leni, Maria Evangelia
Kaili, Stavroula I.
Chegkazi, Magda S.
Chrysina, Evangelia D.
Kolisis, Fragiskos N.
Hatzinikolaou, Dimitris G.
Skretas, Georgios
author_sort Zarafeta, Dimitra
collection PubMed
description Xylanolytic enzymes have a broad range of applications in industrial biotechnology as biocatalytic components of various processes and products, such as food additives, bakery products, coffee extraction, agricultural silage and functional foods. An increasing market demand has driven the growing interest for the discovery of xylanases with specific industrially relevant characteristics, such as stability at elevated temperatures and in the presence of other denaturing factors, which will facilitate their incorporation into industrial processes. In this work, we report the discovery and biochemical characterization of a new thermostable GH10 xylanase, termed XynDZ5, exhibiting only 26% amino acid sequence identity to the closest characterized xylanolytic enzyme. This new enzyme was discovered in an Icelandic hot spring enrichment culture of a Thermoanaerobacterium species using a recently developed bioinformatic analysis platform. XynDZ5 was produced recombinantly in Escherichia coli, purified and characterized biochemically. This analysis revealed that it acts as an endo-1,4-β-xylanase that performs optimally at 65–75°C and pH 7.5. The enzyme is capable of retaining high levels of catalytic efficiency after several hours of incubation at high temperatures, as well as in the presence of significant concentrations of a range of metal ions and denaturing agents. Interestingly, the XynDZ5 biochemical profile was found to be atypical, as it also exhibits significant exo-activity. Computational modeling of its three-dimensional structure predicted a (β/α)(8) TIM barrel fold, which is very frequently encountered among family GH10 enzymes. This modeled structure has provided clues about structural features that may explain aspects of its catalytic performance. Our results suggest that XynDZ5 represents a promising new candidate biocatalyst appropriate for several high-temperature biotechnological applications in the pulp, paper, baking, animal-feed and biofuel industries.
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spelling pubmed-71932312020-05-08 XynDZ5: A New Thermostable GH10 Xylanase Zarafeta, Dimitra Galanopoulou, Anastasia P. Leni, Maria Evangelia Kaili, Stavroula I. Chegkazi, Magda S. Chrysina, Evangelia D. Kolisis, Fragiskos N. Hatzinikolaou, Dimitris G. Skretas, Georgios Front Microbiol Microbiology Xylanolytic enzymes have a broad range of applications in industrial biotechnology as biocatalytic components of various processes and products, such as food additives, bakery products, coffee extraction, agricultural silage and functional foods. An increasing market demand has driven the growing interest for the discovery of xylanases with specific industrially relevant characteristics, such as stability at elevated temperatures and in the presence of other denaturing factors, which will facilitate their incorporation into industrial processes. In this work, we report the discovery and biochemical characterization of a new thermostable GH10 xylanase, termed XynDZ5, exhibiting only 26% amino acid sequence identity to the closest characterized xylanolytic enzyme. This new enzyme was discovered in an Icelandic hot spring enrichment culture of a Thermoanaerobacterium species using a recently developed bioinformatic analysis platform. XynDZ5 was produced recombinantly in Escherichia coli, purified and characterized biochemically. This analysis revealed that it acts as an endo-1,4-β-xylanase that performs optimally at 65–75°C and pH 7.5. The enzyme is capable of retaining high levels of catalytic efficiency after several hours of incubation at high temperatures, as well as in the presence of significant concentrations of a range of metal ions and denaturing agents. Interestingly, the XynDZ5 biochemical profile was found to be atypical, as it also exhibits significant exo-activity. Computational modeling of its three-dimensional structure predicted a (β/α)(8) TIM barrel fold, which is very frequently encountered among family GH10 enzymes. This modeled structure has provided clues about structural features that may explain aspects of its catalytic performance. Our results suggest that XynDZ5 represents a promising new candidate biocatalyst appropriate for several high-temperature biotechnological applications in the pulp, paper, baking, animal-feed and biofuel industries. Frontiers Media S.A. 2020-04-24 /pmc/articles/PMC7193231/ /pubmed/32390953 http://dx.doi.org/10.3389/fmicb.2020.00545 Text en Copyright © 2020 Zarafeta, Galanopoulou, Leni, Kaili, Chegkazi, Chrysina, Kolisis, Hatzinikolaou and Skretas. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Zarafeta, Dimitra
Galanopoulou, Anastasia P.
Leni, Maria Evangelia
Kaili, Stavroula I.
Chegkazi, Magda S.
Chrysina, Evangelia D.
Kolisis, Fragiskos N.
Hatzinikolaou, Dimitris G.
Skretas, Georgios
XynDZ5: A New Thermostable GH10 Xylanase
title XynDZ5: A New Thermostable GH10 Xylanase
title_full XynDZ5: A New Thermostable GH10 Xylanase
title_fullStr XynDZ5: A New Thermostable GH10 Xylanase
title_full_unstemmed XynDZ5: A New Thermostable GH10 Xylanase
title_short XynDZ5: A New Thermostable GH10 Xylanase
title_sort xyndz5: a new thermostable gh10 xylanase
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7193231/
https://www.ncbi.nlm.nih.gov/pubmed/32390953
http://dx.doi.org/10.3389/fmicb.2020.00545
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