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Heme metabolism genes Downregulated in COPD Cachexia
INTRODUCTION: Cachexia contributes to increased mortality and reduced quality of life in Chronic Obstructive Pulmonary Disease (COPD) and may be associated with underlying gene expression changes. Our goal was to identify differential gene expression signatures associated with COPD cachexia in curre...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7193359/ https://www.ncbi.nlm.nih.gov/pubmed/32354332 http://dx.doi.org/10.1186/s12931-020-01336-w |
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author | Wilson, Ava C. Kumar, Preeti L. Lee, Sool Parker, Margaret M. Arora, Itika Morrow, Jarrett D. Wouters, Emiel F. M. Casaburi, Richard Rennard, Stephen I. Lomas, David A. Agusti, Alvar Tal-Singer, Ruth Dransfield, Mark T. Wells, J. Michael Bhatt, Surya P. Washko, George Thannickal, Victor J. Tiwari, Hemant K. Hersh, Craig P. Castaldi, Peter J. Silverman, Edwin K. McDonald, Merry-Lynn N. |
author_facet | Wilson, Ava C. Kumar, Preeti L. Lee, Sool Parker, Margaret M. Arora, Itika Morrow, Jarrett D. Wouters, Emiel F. M. Casaburi, Richard Rennard, Stephen I. Lomas, David A. Agusti, Alvar Tal-Singer, Ruth Dransfield, Mark T. Wells, J. Michael Bhatt, Surya P. Washko, George Thannickal, Victor J. Tiwari, Hemant K. Hersh, Craig P. Castaldi, Peter J. Silverman, Edwin K. McDonald, Merry-Lynn N. |
author_sort | Wilson, Ava C. |
collection | PubMed |
description | INTRODUCTION: Cachexia contributes to increased mortality and reduced quality of life in Chronic Obstructive Pulmonary Disease (COPD) and may be associated with underlying gene expression changes. Our goal was to identify differential gene expression signatures associated with COPD cachexia in current and former smokers. METHODS: We analyzed whole-blood gene expression data from participants with COPD in a discovery cohort (COPDGene, N = 400) and assessed replication (ECLIPSE, N = 114). To approximate the consensus definition using available criteria, cachexia was defined as weight-loss > 5% in the past 12 months or low body mass index (BMI) (< 20 kg/m(2)) and 1/3 criteria: decreased muscle strength (six-minute walk distance < 350 m), anemia (hemoglobin < 12 g/dl), and low fat-free mass index (FFMI) (< 15 kg/m(2) among women and < 17 kg/m(2) among men) in COPDGene. In ECLIPSE, cachexia was defined as weight-loss > 5% in the past 12 months or low BMI and 3/5 criteria: decreased muscle strength, anorexia, abnormal biochemistry (anemia or high c-reactive protein (> 5 mg/l)), fatigue, and low FFMI. Differential gene expression was assessed between cachectic and non-cachectic subjects, adjusting for age, sex, white blood cell counts, and technical covariates. Gene set enrichment analysis was performed using MSigDB. RESULTS: The prevalence of COPD cachexia was 13.7% in COPDGene and 7.9% in ECLIPSE. Fourteen genes were differentially downregulated in cachectic versus non-cachectic COPD patients in COPDGene (FDR < 0.05) and ECLIPSE (FDR < 0.05). DISCUSSION: Several replicated genes regulating heme metabolism were downregulated among participants with COPD cachexia. Impaired heme biosynthesis may contribute to cachexia development through free-iron buildup and oxidative tissue damage. |
format | Online Article Text |
id | pubmed-7193359 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-71933592020-05-06 Heme metabolism genes Downregulated in COPD Cachexia Wilson, Ava C. Kumar, Preeti L. Lee, Sool Parker, Margaret M. Arora, Itika Morrow, Jarrett D. Wouters, Emiel F. M. Casaburi, Richard Rennard, Stephen I. Lomas, David A. Agusti, Alvar Tal-Singer, Ruth Dransfield, Mark T. Wells, J. Michael Bhatt, Surya P. Washko, George Thannickal, Victor J. Tiwari, Hemant K. Hersh, Craig P. Castaldi, Peter J. Silverman, Edwin K. McDonald, Merry-Lynn N. Respir Res Research INTRODUCTION: Cachexia contributes to increased mortality and reduced quality of life in Chronic Obstructive Pulmonary Disease (COPD) and may be associated with underlying gene expression changes. Our goal was to identify differential gene expression signatures associated with COPD cachexia in current and former smokers. METHODS: We analyzed whole-blood gene expression data from participants with COPD in a discovery cohort (COPDGene, N = 400) and assessed replication (ECLIPSE, N = 114). To approximate the consensus definition using available criteria, cachexia was defined as weight-loss > 5% in the past 12 months or low body mass index (BMI) (< 20 kg/m(2)) and 1/3 criteria: decreased muscle strength (six-minute walk distance < 350 m), anemia (hemoglobin < 12 g/dl), and low fat-free mass index (FFMI) (< 15 kg/m(2) among women and < 17 kg/m(2) among men) in COPDGene. In ECLIPSE, cachexia was defined as weight-loss > 5% in the past 12 months or low BMI and 3/5 criteria: decreased muscle strength, anorexia, abnormal biochemistry (anemia or high c-reactive protein (> 5 mg/l)), fatigue, and low FFMI. Differential gene expression was assessed between cachectic and non-cachectic subjects, adjusting for age, sex, white blood cell counts, and technical covariates. Gene set enrichment analysis was performed using MSigDB. RESULTS: The prevalence of COPD cachexia was 13.7% in COPDGene and 7.9% in ECLIPSE. Fourteen genes were differentially downregulated in cachectic versus non-cachectic COPD patients in COPDGene (FDR < 0.05) and ECLIPSE (FDR < 0.05). DISCUSSION: Several replicated genes regulating heme metabolism were downregulated among participants with COPD cachexia. Impaired heme biosynthesis may contribute to cachexia development through free-iron buildup and oxidative tissue damage. BioMed Central 2020-05-01 2020 /pmc/articles/PMC7193359/ /pubmed/32354332 http://dx.doi.org/10.1186/s12931-020-01336-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Wilson, Ava C. Kumar, Preeti L. Lee, Sool Parker, Margaret M. Arora, Itika Morrow, Jarrett D. Wouters, Emiel F. M. Casaburi, Richard Rennard, Stephen I. Lomas, David A. Agusti, Alvar Tal-Singer, Ruth Dransfield, Mark T. Wells, J. Michael Bhatt, Surya P. Washko, George Thannickal, Victor J. Tiwari, Hemant K. Hersh, Craig P. Castaldi, Peter J. Silverman, Edwin K. McDonald, Merry-Lynn N. Heme metabolism genes Downregulated in COPD Cachexia |
title | Heme metabolism genes Downregulated in COPD Cachexia |
title_full | Heme metabolism genes Downregulated in COPD Cachexia |
title_fullStr | Heme metabolism genes Downregulated in COPD Cachexia |
title_full_unstemmed | Heme metabolism genes Downregulated in COPD Cachexia |
title_short | Heme metabolism genes Downregulated in COPD Cachexia |
title_sort | heme metabolism genes downregulated in copd cachexia |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7193359/ https://www.ncbi.nlm.nih.gov/pubmed/32354332 http://dx.doi.org/10.1186/s12931-020-01336-w |
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