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Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History

The Norwegian White sheep (NWS) and New Zealand Terminal Sire Composite (NZC) sheep breeds have been developed based on crossing of multiple breeds, mainly of Northern European origin. A close genetic relationship between these populations could enable across-country genomic evaluations. The main ob...

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Autores principales: Oliveira, Hinayah Rojas, McEwan, John Colin, Jakobsen, Jette, Blichfeldt, Thor, Meuwissen, Theodorus, Pickering, Natalie, Clarke, Shannon Marie, Brito, Luiz F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7194024/
https://www.ncbi.nlm.nih.gov/pubmed/32391056
http://dx.doi.org/10.3389/fgene.2020.00371
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author Oliveira, Hinayah Rojas
McEwan, John Colin
Jakobsen, Jette
Blichfeldt, Thor
Meuwissen, Theodorus
Pickering, Natalie
Clarke, Shannon Marie
Brito, Luiz F.
author_facet Oliveira, Hinayah Rojas
McEwan, John Colin
Jakobsen, Jette
Blichfeldt, Thor
Meuwissen, Theodorus
Pickering, Natalie
Clarke, Shannon Marie
Brito, Luiz F.
author_sort Oliveira, Hinayah Rojas
collection PubMed
description The Norwegian White sheep (NWS) and New Zealand Terminal Sire Composite (NZC) sheep breeds have been developed based on crossing of multiple breeds, mainly of Northern European origin. A close genetic relationship between these populations could enable across-country genomic evaluations. The main objectives of this study were to assess the genetic connectedness between Norwegian and New Zealand sheep populations and estimate numerous genetic diversity metrics for these two populations. A total of 792 NWS and 16,912 NZC animals were genotyped using a high-density Illumina SNP chip panel (∼606K SNPs). The NZC animals were grouped based on their breed composition as: Finn, Lamb Supreme, Primera, Texel, “Other Dual Purpose”, and “Other Terminal Sire”. The average level of linkage disequilibrium ranged from 0.156 (for Primera) to 0.231 (for Finn). The lowest consistency of gametic phase was estimated between NWS and Finn (0.397), and between NWS and Texel (0.443), respectively. Similar consistency of gametic phase was estimated between NWS and the other NZC populations (∼ 0.52). For all composite sheep populations analyzed in this study, the majority of runs of homozygosity (ROH) segments identified had short length (<2,500 kb), indicating ancient (instead of recent) inbreeding. The variation in the number of ROH segments observed in the NWS was similar to the variation observed in Primera and Lamb Supreme. There was no clear discrimination between NWS and NZC based on the first few principal components. In addition, based on admixture analyses, there seems to be a significant overlap of the ancestral populations that contributed to the development of both NWS and NZC. There were no evident signatures of selection in these populations, which might be due to recent crossbreeding. In conclusion, the NWS composite breed was shown to be moderately related to NZC populations, especially Primera and Lamb Supreme. The findings reported here indicate a promising opportunity for collaborative genomic analyses involving NWS and NZC sheep populations.
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spelling pubmed-71940242020-05-08 Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History Oliveira, Hinayah Rojas McEwan, John Colin Jakobsen, Jette Blichfeldt, Thor Meuwissen, Theodorus Pickering, Natalie Clarke, Shannon Marie Brito, Luiz F. Front Genet Genetics The Norwegian White sheep (NWS) and New Zealand Terminal Sire Composite (NZC) sheep breeds have been developed based on crossing of multiple breeds, mainly of Northern European origin. A close genetic relationship between these populations could enable across-country genomic evaluations. The main objectives of this study were to assess the genetic connectedness between Norwegian and New Zealand sheep populations and estimate numerous genetic diversity metrics for these two populations. A total of 792 NWS and 16,912 NZC animals were genotyped using a high-density Illumina SNP chip panel (∼606K SNPs). The NZC animals were grouped based on their breed composition as: Finn, Lamb Supreme, Primera, Texel, “Other Dual Purpose”, and “Other Terminal Sire”. The average level of linkage disequilibrium ranged from 0.156 (for Primera) to 0.231 (for Finn). The lowest consistency of gametic phase was estimated between NWS and Finn (0.397), and between NWS and Texel (0.443), respectively. Similar consistency of gametic phase was estimated between NWS and the other NZC populations (∼ 0.52). For all composite sheep populations analyzed in this study, the majority of runs of homozygosity (ROH) segments identified had short length (<2,500 kb), indicating ancient (instead of recent) inbreeding. The variation in the number of ROH segments observed in the NWS was similar to the variation observed in Primera and Lamb Supreme. There was no clear discrimination between NWS and NZC based on the first few principal components. In addition, based on admixture analyses, there seems to be a significant overlap of the ancestral populations that contributed to the development of both NWS and NZC. There were no evident signatures of selection in these populations, which might be due to recent crossbreeding. In conclusion, the NWS composite breed was shown to be moderately related to NZC populations, especially Primera and Lamb Supreme. The findings reported here indicate a promising opportunity for collaborative genomic analyses involving NWS and NZC sheep populations. Frontiers Media S.A. 2020-04-24 /pmc/articles/PMC7194024/ /pubmed/32391056 http://dx.doi.org/10.3389/fgene.2020.00371 Text en Copyright © 2020 Oliveira, McEwan, Jakobsen, Blichfeldt, Meuwissen, Pickering, Clarke and Brito. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Oliveira, Hinayah Rojas
McEwan, John Colin
Jakobsen, Jette
Blichfeldt, Thor
Meuwissen, Theodorus
Pickering, Natalie
Clarke, Shannon Marie
Brito, Luiz F.
Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History
title Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History
title_full Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History
title_fullStr Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History
title_full_unstemmed Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History
title_short Genetic Connectedness Between Norwegian White Sheep and New Zealand Composite Sheep Populations With Similar Development History
title_sort genetic connectedness between norwegian white sheep and new zealand composite sheep populations with similar development history
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7194024/
https://www.ncbi.nlm.nih.gov/pubmed/32391056
http://dx.doi.org/10.3389/fgene.2020.00371
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