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Investigating the Added Value of FreeSurfer’s Manual Editing Procedure for the Study of the Reading Network in a Pediatric Population

Insights into brain anatomy are important for the early detection of neurodevelopmental disorders, such as dyslexia. FreeSurfer is one of the most frequently applied automatized software tools to study brain morphology. However, quality control of the outcomes provided by FreeSurfer is often ignored...

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Autores principales: Beelen, Caroline, Phan, Thanh Vân, Wouters, Jan, Ghesquière, Pol, Vandermosten, Maaike
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7194167/
https://www.ncbi.nlm.nih.gov/pubmed/32390814
http://dx.doi.org/10.3389/fnhum.2020.00143
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author Beelen, Caroline
Phan, Thanh Vân
Wouters, Jan
Ghesquière, Pol
Vandermosten, Maaike
author_facet Beelen, Caroline
Phan, Thanh Vân
Wouters, Jan
Ghesquière, Pol
Vandermosten, Maaike
author_sort Beelen, Caroline
collection PubMed
description Insights into brain anatomy are important for the early detection of neurodevelopmental disorders, such as dyslexia. FreeSurfer is one of the most frequently applied automatized software tools to study brain morphology. However, quality control of the outcomes provided by FreeSurfer is often ignored and could lead to wrong statistical inferences. Additional manual editing of the data may be a solution, although not without a cost in time and resources. Past research in adults on comparing the automatized method of FreeSurfer with and without additional manual editing indicated that although editing may lead to significant differences in morphological measures between the methods in some regions, it does not substantially change the sensitivity to detect clinical differences. Given that automated approaches are more likely to fail in pediatric—and inherently more noisy—data, we investigated in the current study whether FreeSurfer can be applied fully automatically or additional manual edits of T1-images are needed in a pediatric sample. Specifically, cortical thickness and surface area measures with and without additional manual edits were compared in six regions of interest (ROIs) of the reading network in 5-to-6-year-old children with and without dyslexia. Results revealed that additional editing leads to statistical differences in the morphological measures, but that these differences are consistent across subjects and that the sensitivity to reveal statistical differences in the morphological measures between children with and without dyslexia is not affected, even though conclusions of marginally significant findings can differ depending on the method used. Thereby, our results indicate that additional manual editing of reading-related regions in FreeSurfer has limited gain for pediatric samples.
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spelling pubmed-71941672020-05-08 Investigating the Added Value of FreeSurfer’s Manual Editing Procedure for the Study of the Reading Network in a Pediatric Population Beelen, Caroline Phan, Thanh Vân Wouters, Jan Ghesquière, Pol Vandermosten, Maaike Front Hum Neurosci Human Neuroscience Insights into brain anatomy are important for the early detection of neurodevelopmental disorders, such as dyslexia. FreeSurfer is one of the most frequently applied automatized software tools to study brain morphology. However, quality control of the outcomes provided by FreeSurfer is often ignored and could lead to wrong statistical inferences. Additional manual editing of the data may be a solution, although not without a cost in time and resources. Past research in adults on comparing the automatized method of FreeSurfer with and without additional manual editing indicated that although editing may lead to significant differences in morphological measures between the methods in some regions, it does not substantially change the sensitivity to detect clinical differences. Given that automated approaches are more likely to fail in pediatric—and inherently more noisy—data, we investigated in the current study whether FreeSurfer can be applied fully automatically or additional manual edits of T1-images are needed in a pediatric sample. Specifically, cortical thickness and surface area measures with and without additional manual edits were compared in six regions of interest (ROIs) of the reading network in 5-to-6-year-old children with and without dyslexia. Results revealed that additional editing leads to statistical differences in the morphological measures, but that these differences are consistent across subjects and that the sensitivity to reveal statistical differences in the morphological measures between children with and without dyslexia is not affected, even though conclusions of marginally significant findings can differ depending on the method used. Thereby, our results indicate that additional manual editing of reading-related regions in FreeSurfer has limited gain for pediatric samples. Frontiers Media S.A. 2020-04-24 /pmc/articles/PMC7194167/ /pubmed/32390814 http://dx.doi.org/10.3389/fnhum.2020.00143 Text en Copyright © 2020 Beelen, Phan, Wouters, Ghesquière and Vandermosten. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Human Neuroscience
Beelen, Caroline
Phan, Thanh Vân
Wouters, Jan
Ghesquière, Pol
Vandermosten, Maaike
Investigating the Added Value of FreeSurfer’s Manual Editing Procedure for the Study of the Reading Network in a Pediatric Population
title Investigating the Added Value of FreeSurfer’s Manual Editing Procedure for the Study of the Reading Network in a Pediatric Population
title_full Investigating the Added Value of FreeSurfer’s Manual Editing Procedure for the Study of the Reading Network in a Pediatric Population
title_fullStr Investigating the Added Value of FreeSurfer’s Manual Editing Procedure for the Study of the Reading Network in a Pediatric Population
title_full_unstemmed Investigating the Added Value of FreeSurfer’s Manual Editing Procedure for the Study of the Reading Network in a Pediatric Population
title_short Investigating the Added Value of FreeSurfer’s Manual Editing Procedure for the Study of the Reading Network in a Pediatric Population
title_sort investigating the added value of freesurfer’s manual editing procedure for the study of the reading network in a pediatric population
topic Human Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7194167/
https://www.ncbi.nlm.nih.gov/pubmed/32390814
http://dx.doi.org/10.3389/fnhum.2020.00143
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