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CpGDB : A Comprehensive Database of Chloroplast Genomes
Chloroplast Genome Database (CpGDB) is user friendly, web-based, freely available and dynamic relational database which provides a platform for researchers to search and download complete chloroplast genome sequences, individual gene sequences and feature records of plant species belonging to same o...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7196173/ https://www.ncbi.nlm.nih.gov/pubmed/32405169 http://dx.doi.org/10.6026/97320630016171 |
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author | Singh, Bhupinder Pal Kumar, Ajay Kaur, Harpreet Singh, Harpreet Nagpal, Avinash Kaur |
author_facet | Singh, Bhupinder Pal Kumar, Ajay Kaur, Harpreet Singh, Harpreet Nagpal, Avinash Kaur |
author_sort | Singh, Bhupinder Pal |
collection | PubMed |
description | Chloroplast Genome Database (CpGDB) is user friendly, web-based, freely available and dynamic relational database which provides a platform for researchers to search and download complete chloroplast genome sequences, individual gene sequences and feature records of plant species belonging to same or different families of spermatophytes. Presently, the database consists of genome sequences, individual gene sequences and feature records of chloroplast genomes of 3823 plant species belonging to 1527 genera from 256 families, which will be updated regularly with the availability of new sequences at NCBI. Extensive data mining of feature records from GenBank files, uniform nomenclature for majority of genes, enriched intron/exon feature records makes CpGDB a valuable resource for studies in chloroplast genomics while complementing existing chloroplast databases. |
format | Online Article Text |
id | pubmed-7196173 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-71961732020-05-13 CpGDB : A Comprehensive Database of Chloroplast Genomes Singh, Bhupinder Pal Kumar, Ajay Kaur, Harpreet Singh, Harpreet Nagpal, Avinash Kaur Bioinformation Research-Article Chloroplast Genome Database (CpGDB) is user friendly, web-based, freely available and dynamic relational database which provides a platform for researchers to search and download complete chloroplast genome sequences, individual gene sequences and feature records of plant species belonging to same or different families of spermatophytes. Presently, the database consists of genome sequences, individual gene sequences and feature records of chloroplast genomes of 3823 plant species belonging to 1527 genera from 256 families, which will be updated regularly with the availability of new sequences at NCBI. Extensive data mining of feature records from GenBank files, uniform nomenclature for majority of genes, enriched intron/exon feature records makes CpGDB a valuable resource for studies in chloroplast genomics while complementing existing chloroplast databases. Biomedical Informatics 2020-02-29 /pmc/articles/PMC7196173/ /pubmed/32405169 http://dx.doi.org/10.6026/97320630016171 Text en © 2020 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Research-Article Singh, Bhupinder Pal Kumar, Ajay Kaur, Harpreet Singh, Harpreet Nagpal, Avinash Kaur CpGDB : A Comprehensive Database of Chloroplast Genomes |
title | CpGDB : A Comprehensive Database of Chloroplast Genomes |
title_full | CpGDB : A Comprehensive Database of Chloroplast Genomes |
title_fullStr | CpGDB : A Comprehensive Database of Chloroplast Genomes |
title_full_unstemmed | CpGDB : A Comprehensive Database of Chloroplast Genomes |
title_short | CpGDB : A Comprehensive Database of Chloroplast Genomes |
title_sort | cpgdb : a comprehensive database of chloroplast genomes |
topic | Research-Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7196173/ https://www.ncbi.nlm.nih.gov/pubmed/32405169 http://dx.doi.org/10.6026/97320630016171 |
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