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CpGDB : A Comprehensive Database of Chloroplast Genomes

Chloroplast Genome Database (CpGDB) is user friendly, web-based, freely available and dynamic relational database which provides a platform for researchers to search and download complete chloroplast genome sequences, individual gene sequences and feature records of plant species belonging to same o...

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Autores principales: Singh, Bhupinder Pal, Kumar, Ajay, Kaur, Harpreet, Singh, Harpreet, Nagpal, Avinash Kaur
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7196173/
https://www.ncbi.nlm.nih.gov/pubmed/32405169
http://dx.doi.org/10.6026/97320630016171
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author Singh, Bhupinder Pal
Kumar, Ajay
Kaur, Harpreet
Singh, Harpreet
Nagpal, Avinash Kaur
author_facet Singh, Bhupinder Pal
Kumar, Ajay
Kaur, Harpreet
Singh, Harpreet
Nagpal, Avinash Kaur
author_sort Singh, Bhupinder Pal
collection PubMed
description Chloroplast Genome Database (CpGDB) is user friendly, web-based, freely available and dynamic relational database which provides a platform for researchers to search and download complete chloroplast genome sequences, individual gene sequences and feature records of plant species belonging to same or different families of spermatophytes. Presently, the database consists of genome sequences, individual gene sequences and feature records of chloroplast genomes of 3823 plant species belonging to 1527 genera from 256 families, which will be updated regularly with the availability of new sequences at NCBI. Extensive data mining of feature records from GenBank files, uniform nomenclature for majority of genes, enriched intron/exon feature records makes CpGDB a valuable resource for studies in chloroplast genomics while complementing existing chloroplast databases.
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spelling pubmed-71961732020-05-13 CpGDB : A Comprehensive Database of Chloroplast Genomes Singh, Bhupinder Pal Kumar, Ajay Kaur, Harpreet Singh, Harpreet Nagpal, Avinash Kaur Bioinformation Research-Article Chloroplast Genome Database (CpGDB) is user friendly, web-based, freely available and dynamic relational database which provides a platform for researchers to search and download complete chloroplast genome sequences, individual gene sequences and feature records of plant species belonging to same or different families of spermatophytes. Presently, the database consists of genome sequences, individual gene sequences and feature records of chloroplast genomes of 3823 plant species belonging to 1527 genera from 256 families, which will be updated regularly with the availability of new sequences at NCBI. Extensive data mining of feature records from GenBank files, uniform nomenclature for majority of genes, enriched intron/exon feature records makes CpGDB a valuable resource for studies in chloroplast genomics while complementing existing chloroplast databases. Biomedical Informatics 2020-02-29 /pmc/articles/PMC7196173/ /pubmed/32405169 http://dx.doi.org/10.6026/97320630016171 Text en © 2020 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research-Article
Singh, Bhupinder Pal
Kumar, Ajay
Kaur, Harpreet
Singh, Harpreet
Nagpal, Avinash Kaur
CpGDB : A Comprehensive Database of Chloroplast Genomes
title CpGDB : A Comprehensive Database of Chloroplast Genomes
title_full CpGDB : A Comprehensive Database of Chloroplast Genomes
title_fullStr CpGDB : A Comprehensive Database of Chloroplast Genomes
title_full_unstemmed CpGDB : A Comprehensive Database of Chloroplast Genomes
title_short CpGDB : A Comprehensive Database of Chloroplast Genomes
title_sort cpgdb : a comprehensive database of chloroplast genomes
topic Research-Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7196173/
https://www.ncbi.nlm.nih.gov/pubmed/32405169
http://dx.doi.org/10.6026/97320630016171
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