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Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)-6-methoxyphenol
The title compound, C(18)H(16)N(2)O(2), consists of perimidine and methoxyphenol units, where the tricyclic perimidine unit contains a naphthalene ring system and a non-planar C(4)N(2) ring adopting an envelope conformation with the NCN group hinged by 47.44 (7)° with respect to the best plane of...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7199263/ https://www.ncbi.nlm.nih.gov/pubmed/32431917 http://dx.doi.org/10.1107/S2056989020004284 |
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author | Daouda, Ballo Tuo, Nanou Tiéba Hökelek, Tuncer Niameke Jean-Baptiste, Kangah Charles Guillaume, Kodjo Claude, Kablan Ahmont Landry Essassi, El Mokhtar |
author_facet | Daouda, Ballo Tuo, Nanou Tiéba Hökelek, Tuncer Niameke Jean-Baptiste, Kangah Charles Guillaume, Kodjo Claude, Kablan Ahmont Landry Essassi, El Mokhtar |
author_sort | Daouda, Ballo |
collection | PubMed |
description | The title compound, C(18)H(16)N(2)O(2), consists of perimidine and methoxyphenol units, where the tricyclic perimidine unit contains a naphthalene ring system and a non-planar C(4)N(2) ring adopting an envelope conformation with the NCN group hinged by 47.44 (7)° with respect to the best plane of the other five atoms. In the crystal, O—H(Phnl)⋯N(Prmdn) and N—H(Prmdn)⋯O(Phnl) (Phnl = phenol and Prmdn = perimidine) hydrogen bonds link the molecules into infinite chains along the b-axis direction. Weak C—H⋯π interactions may further stabilize the crystal structure. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (49.0%), H⋯C/C⋯H (35.8%) and H⋯O/O⋯H (12.0%) interactions. Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packing. Computational chemistry indicates that in the crystal, the O—H(Phnl)⋯N(Prmdn) and N—H(Prmdn)⋯O(Phnl) hydrogen-bond energies are 58.4 and 38.0 kJ mol(−1), respectively. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. |
format | Online Article Text |
id | pubmed-7199263 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-71992632020-05-19 Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)-6-methoxyphenol Daouda, Ballo Tuo, Nanou Tiéba Hökelek, Tuncer Niameke Jean-Baptiste, Kangah Charles Guillaume, Kodjo Claude, Kablan Ahmont Landry Essassi, El Mokhtar Acta Crystallogr E Crystallogr Commun Research Communications The title compound, C(18)H(16)N(2)O(2), consists of perimidine and methoxyphenol units, where the tricyclic perimidine unit contains a naphthalene ring system and a non-planar C(4)N(2) ring adopting an envelope conformation with the NCN group hinged by 47.44 (7)° with respect to the best plane of the other five atoms. In the crystal, O—H(Phnl)⋯N(Prmdn) and N—H(Prmdn)⋯O(Phnl) (Phnl = phenol and Prmdn = perimidine) hydrogen bonds link the molecules into infinite chains along the b-axis direction. Weak C—H⋯π interactions may further stabilize the crystal structure. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (49.0%), H⋯C/C⋯H (35.8%) and H⋯O/O⋯H (12.0%) interactions. Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packing. Computational chemistry indicates that in the crystal, the O—H(Phnl)⋯N(Prmdn) and N—H(Prmdn)⋯O(Phnl) hydrogen-bond energies are 58.4 and 38.0 kJ mol(−1), respectively. Density functional theory (DFT) optimized structures at the B3LYP/ 6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. International Union of Crystallography 2020-04-03 /pmc/articles/PMC7199263/ /pubmed/32431917 http://dx.doi.org/10.1107/S2056989020004284 Text en © Daouda et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Daouda, Ballo Tuo, Nanou Tiéba Hökelek, Tuncer Niameke Jean-Baptiste, Kangah Charles Guillaume, Kodjo Claude, Kablan Ahmont Landry Essassi, El Mokhtar Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)-6-methoxyphenol |
title | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)-6-methoxyphenol |
title_full | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)-6-methoxyphenol |
title_fullStr | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)-6-methoxyphenol |
title_full_unstemmed | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)-6-methoxyphenol |
title_short | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 2-(2,3-dihydro-1H-perimidin-2-yl)-6-methoxyphenol |
title_sort | crystal structure, hirshfeld surface analysis and interaction energy and dft studies of 2-(2,3-dihydro-1h-perimidin-2-yl)-6-methoxyphenol |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7199263/ https://www.ncbi.nlm.nih.gov/pubmed/32431917 http://dx.doi.org/10.1107/S2056989020004284 |
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