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Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation

Psidium cattleyanum Sabine is an Atlantic Forest native species that presents some populations with red fruits and others with yellow fruits. This variation in fruit pigmentation in this species is an intriguing character that could be related to species evolution but still needs to be further explo...

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Autores principales: Vetö, Nicole M., Guzman, Frank, Kulcheski, Franceli R., Segatto, Ana Lúcia A., Lacerda, Maria Eduarda G., Margis, Rogerio, Turchetto-Zolet, Andreia C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Sociedade Brasileira de Genética 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7199922/
https://www.ncbi.nlm.nih.gov/pubmed/32353098
http://dx.doi.org/10.1590/1678-4685-GMB-2019-0255
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author Vetö, Nicole M.
Guzman, Frank
Kulcheski, Franceli R.
Segatto, Ana Lúcia A.
Lacerda, Maria Eduarda G.
Margis, Rogerio
Turchetto-Zolet, Andreia C.
author_facet Vetö, Nicole M.
Guzman, Frank
Kulcheski, Franceli R.
Segatto, Ana Lúcia A.
Lacerda, Maria Eduarda G.
Margis, Rogerio
Turchetto-Zolet, Andreia C.
author_sort Vetö, Nicole M.
collection PubMed
description Psidium cattleyanum Sabine is an Atlantic Forest native species that presents some populations with red fruits and others with yellow fruits. This variation in fruit pigmentation in this species is an intriguing character that could be related to species evolution but still needs to be further explored. Our goal was to provide genomic information for these morphotypes to understand the molecular mechanisms of differences in fruit colour in this species. In this study, we performed a comparative transcriptome analysis of red and yellow morphotypes of P. cattleyanum, considering two stages of fruit ripening. The transcriptomic analysis performed encompassing leaves, unripe and ripe fruits, in triplicate for each morphotype. The transcriptome consensus from each morphotype showed 301,058 and 298,310 contigs from plants with yellow and red fruits, respectively. The differential expression revealed important genes that were involved in anthocyanins biosynthesis, such as the anthocyanidin synthase (ANS) and UDP-glucose:flavonoid-o-glucosyltransferase (UFGT) that were differentially regulated during fruit ripening. This study reveals stimulating data for the understanding of the pathways and mechanisms involved in the maturation and colouring of P. cattleyanum fruits and suggests that the ANS and UFGT genes are key factors involved in the synthase and pigmentation accumulation in red fruits.
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spelling pubmed-71999222020-05-08 Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation Vetö, Nicole M. Guzman, Frank Kulcheski, Franceli R. Segatto, Ana Lúcia A. Lacerda, Maria Eduarda G. Margis, Rogerio Turchetto-Zolet, Andreia C. Genet Mol Biol Genomics and Bioinformatics Psidium cattleyanum Sabine is an Atlantic Forest native species that presents some populations with red fruits and others with yellow fruits. This variation in fruit pigmentation in this species is an intriguing character that could be related to species evolution but still needs to be further explored. Our goal was to provide genomic information for these morphotypes to understand the molecular mechanisms of differences in fruit colour in this species. In this study, we performed a comparative transcriptome analysis of red and yellow morphotypes of P. cattleyanum, considering two stages of fruit ripening. The transcriptomic analysis performed encompassing leaves, unripe and ripe fruits, in triplicate for each morphotype. The transcriptome consensus from each morphotype showed 301,058 and 298,310 contigs from plants with yellow and red fruits, respectively. The differential expression revealed important genes that were involved in anthocyanins biosynthesis, such as the anthocyanidin synthase (ANS) and UDP-glucose:flavonoid-o-glucosyltransferase (UFGT) that were differentially regulated during fruit ripening. This study reveals stimulating data for the understanding of the pathways and mechanisms involved in the maturation and colouring of P. cattleyanum fruits and suggests that the ANS and UFGT genes are key factors involved in the synthase and pigmentation accumulation in red fruits. Sociedade Brasileira de Genética 2020-04-27 /pmc/articles/PMC7199922/ /pubmed/32353098 http://dx.doi.org/10.1590/1678-4685-GMB-2019-0255 Text en Copyright © 2020, Sociedade Brasileira de Genética. https://creativecommons.org/licenses/by/4.0/ License information: This is an open-access article distributed under the terms of the Creative Commons Attribution License (type CC-BY), which permits unrestricted use, distribution and reproduction in any medium, provided the original article is properly cited.
spellingShingle Genomics and Bioinformatics
Vetö, Nicole M.
Guzman, Frank
Kulcheski, Franceli R.
Segatto, Ana Lúcia A.
Lacerda, Maria Eduarda G.
Margis, Rogerio
Turchetto-Zolet, Andreia C.
Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_full Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_fullStr Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_full_unstemmed Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_short Transcriptomics analysis of Psidium cattleyanum Sabine (Myrtaceae) unveil potential genes involved in fruit pigmentation
title_sort transcriptomics analysis of psidium cattleyanum sabine (myrtaceae) unveil potential genes involved in fruit pigmentation
topic Genomics and Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7199922/
https://www.ncbi.nlm.nih.gov/pubmed/32353098
http://dx.doi.org/10.1590/1678-4685-GMB-2019-0255
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