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A Non-invasive Method to Diagnose Lung Adenocarcinoma

Purpose: To find out the CT radiomics features of differentiating lung adenocarcinoma from another lung cancer histological type. Methods: This was a historical cohort study, three independent lung cancer cohorts included. One cohort was used to evaluate the stability of radiomics features, one coho...

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Autores principales: Yan, Mengmeng, Wang, Weidong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7200977/
https://www.ncbi.nlm.nih.gov/pubmed/32411600
http://dx.doi.org/10.3389/fonc.2020.00602
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author Yan, Mengmeng
Wang, Weidong
author_facet Yan, Mengmeng
Wang, Weidong
author_sort Yan, Mengmeng
collection PubMed
description Purpose: To find out the CT radiomics features of differentiating lung adenocarcinoma from another lung cancer histological type. Methods: This was a historical cohort study, three independent lung cancer cohorts included. One cohort was used to evaluate the stability of radiomics features, one cohort was used to feature selection, and the last was used to construct and evaluate classification models. The research is divided into four steps: region of interest segmentation, feature extraction, feature selection, and model building and validation. The feature selection methods included the intraclass correlation coefficient, ReliefF coefficient, and Partition-Membership filter. The performance metrics of the classification model included accuracy (Acc), precision (Pre), area under curve (AUC), and kappa statistics. Results: The 10 features (First order shape features: Sphericity and Compacity, Gray-Level Run Length Matrix: Short-Run Emphasis, Low Gray-level Run Emphasis, and High Gray-level Run Emphasis, Gray Level Co-occurrence Matrix: Homogeneity, Energy, Contrast, Correlation, and Dissimilarity) showed the most stable and classification capability. The 6 classifiers, Logistic regression classifier (LR), Sequence Minimum Optimization algorithm, Random Forest, KStar, Naive Bayes and Random Committee, have great performance both on the train and the test sets, and especially LR has the best performance on the test set (Acc = 98.72, Pre = 0.988, AUC = 1, and kappa = 0.974). Conclusion: Lung adenocarcinoma can be identified based on CT radiomics features. We can diagnose lung adenocarcinoma with CT non-invasively.
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spelling pubmed-72009772020-05-14 A Non-invasive Method to Diagnose Lung Adenocarcinoma Yan, Mengmeng Wang, Weidong Front Oncol Oncology Purpose: To find out the CT radiomics features of differentiating lung adenocarcinoma from another lung cancer histological type. Methods: This was a historical cohort study, three independent lung cancer cohorts included. One cohort was used to evaluate the stability of radiomics features, one cohort was used to feature selection, and the last was used to construct and evaluate classification models. The research is divided into four steps: region of interest segmentation, feature extraction, feature selection, and model building and validation. The feature selection methods included the intraclass correlation coefficient, ReliefF coefficient, and Partition-Membership filter. The performance metrics of the classification model included accuracy (Acc), precision (Pre), area under curve (AUC), and kappa statistics. Results: The 10 features (First order shape features: Sphericity and Compacity, Gray-Level Run Length Matrix: Short-Run Emphasis, Low Gray-level Run Emphasis, and High Gray-level Run Emphasis, Gray Level Co-occurrence Matrix: Homogeneity, Energy, Contrast, Correlation, and Dissimilarity) showed the most stable and classification capability. The 6 classifiers, Logistic regression classifier (LR), Sequence Minimum Optimization algorithm, Random Forest, KStar, Naive Bayes and Random Committee, have great performance both on the train and the test sets, and especially LR has the best performance on the test set (Acc = 98.72, Pre = 0.988, AUC = 1, and kappa = 0.974). Conclusion: Lung adenocarcinoma can be identified based on CT radiomics features. We can diagnose lung adenocarcinoma with CT non-invasively. Frontiers Media S.A. 2020-04-29 /pmc/articles/PMC7200977/ /pubmed/32411600 http://dx.doi.org/10.3389/fonc.2020.00602 Text en Copyright © 2020 Yan and Wang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Yan, Mengmeng
Wang, Weidong
A Non-invasive Method to Diagnose Lung Adenocarcinoma
title A Non-invasive Method to Diagnose Lung Adenocarcinoma
title_full A Non-invasive Method to Diagnose Lung Adenocarcinoma
title_fullStr A Non-invasive Method to Diagnose Lung Adenocarcinoma
title_full_unstemmed A Non-invasive Method to Diagnose Lung Adenocarcinoma
title_short A Non-invasive Method to Diagnose Lung Adenocarcinoma
title_sort non-invasive method to diagnose lung adenocarcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7200977/
https://www.ncbi.nlm.nih.gov/pubmed/32411600
http://dx.doi.org/10.3389/fonc.2020.00602
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