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Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve

The white-sands forests or varillales of the Peruvian Amazon are characterized by their distinct physical characteristics, patchy distribution, and endemism [1, 2]. Much research has been conducted on the specialized plant and animal communities that inhabit these ecosystems, yet their soil microbio...

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Autores principales: Castro, Juan C., Maddox, J. Dylan, Rodríguez, Hicler N., Orbe, Richard B., Grandez, Gad E., Feldheim, Kevin A., Cobos, Marianela, Paredes, Jae D., Castro, Carlos G., Marapara, Jorge L., Adrianzén, Pedro M., Braga, Janeth
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7201190/
https://www.ncbi.nlm.nih.gov/pubmed/32382622
http://dx.doi.org/10.1016/j.dib.2020.105625
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author Castro, Juan C.
Maddox, J. Dylan
Rodríguez, Hicler N.
Orbe, Richard B.
Grandez, Gad E.
Feldheim, Kevin A.
Cobos, Marianela
Paredes, Jae D.
Castro, Carlos G.
Marapara, Jorge L.
Adrianzén, Pedro M.
Braga, Janeth
author_facet Castro, Juan C.
Maddox, J. Dylan
Rodríguez, Hicler N.
Orbe, Richard B.
Grandez, Gad E.
Feldheim, Kevin A.
Cobos, Marianela
Paredes, Jae D.
Castro, Carlos G.
Marapara, Jorge L.
Adrianzén, Pedro M.
Braga, Janeth
author_sort Castro, Juan C.
collection PubMed
description The white-sands forests or varillales of the Peruvian Amazon are characterized by their distinct physical characteristics, patchy distribution, and endemism [1, 2]. Much research has been conducted on the specialized plant and animal communities that inhabit these ecosystems, yet their soil microbiomes have yet to be studied. Here we provide metagenomic 16S rDNA amplicon data of soil microbiomes from three types of varillales in Allpahuayo-Mishana National Reserve near Iquitos, Peru. Composite soil samples were collected from very low varillal, high-dry varillal, and high-wet varillal. Purified metagenomic DNA was used to prepare and sequence 16S rDNA metagenomic libraries on the Illumina MiqSeq platform. Raw paired-endsequences were analyzed using the Metagenomics RAST server (MG-RAST) and Parallel-Meta3 software and revealed the existence of a high percentage of undiscovered sequences, potentially indicating specialized bacterial communities in these forests. Also, were predicted several metabolic functions in this dataset. The raw sequence data in fastq format is available in the public repository Discover Mendeley Data (https://data.mendeley.com/datasets/syktzxcnp6/2). Also, is available at NCBI's Sequence Read Archive (SRA) with accession numbers SRX7891206 (very low varillal), SRX7891207 (high-dry varillal), and SRX7891208 (high-wet varillal).
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spelling pubmed-72011902020-05-07 Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve Castro, Juan C. Maddox, J. Dylan Rodríguez, Hicler N. Orbe, Richard B. Grandez, Gad E. Feldheim, Kevin A. Cobos, Marianela Paredes, Jae D. Castro, Carlos G. Marapara, Jorge L. Adrianzén, Pedro M. Braga, Janeth Data Brief Biochemistry, Genetics and Molecular Biology The white-sands forests or varillales of the Peruvian Amazon are characterized by their distinct physical characteristics, patchy distribution, and endemism [1, 2]. Much research has been conducted on the specialized plant and animal communities that inhabit these ecosystems, yet their soil microbiomes have yet to be studied. Here we provide metagenomic 16S rDNA amplicon data of soil microbiomes from three types of varillales in Allpahuayo-Mishana National Reserve near Iquitos, Peru. Composite soil samples were collected from very low varillal, high-dry varillal, and high-wet varillal. Purified metagenomic DNA was used to prepare and sequence 16S rDNA metagenomic libraries on the Illumina MiqSeq platform. Raw paired-endsequences were analyzed using the Metagenomics RAST server (MG-RAST) and Parallel-Meta3 software and revealed the existence of a high percentage of undiscovered sequences, potentially indicating specialized bacterial communities in these forests. Also, were predicted several metabolic functions in this dataset. The raw sequence data in fastq format is available in the public repository Discover Mendeley Data (https://data.mendeley.com/datasets/syktzxcnp6/2). Also, is available at NCBI's Sequence Read Archive (SRA) with accession numbers SRX7891206 (very low varillal), SRX7891207 (high-dry varillal), and SRX7891208 (high-wet varillal). Elsevier 2020-04-28 /pmc/articles/PMC7201190/ /pubmed/32382622 http://dx.doi.org/10.1016/j.dib.2020.105625 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Castro, Juan C.
Maddox, J. Dylan
Rodríguez, Hicler N.
Orbe, Richard B.
Grandez, Gad E.
Feldheim, Kevin A.
Cobos, Marianela
Paredes, Jae D.
Castro, Carlos G.
Marapara, Jorge L.
Adrianzén, Pedro M.
Braga, Janeth
Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve
title Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve
title_full Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve
title_fullStr Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve
title_full_unstemmed Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve
title_short Metagenomic 16S rDNA amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in Allpahuayo-Mishana National Reserve
title_sort metagenomic 16s rdna amplicon data on bacterial diversity profiling and its predicted metabolic functions of varillales in allpahuayo-mishana national reserve
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7201190/
https://www.ncbi.nlm.nih.gov/pubmed/32382622
http://dx.doi.org/10.1016/j.dib.2020.105625
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