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Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Images

Previous works on segmentation of SEM (scanning electron microscope) blood cell image ignore the semantic segmentation approach of whole-slide blood cell segmentation. In the proposed work, we address the problem of whole-slide blood cell segmentation using the semantic segmentation approach. We des...

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Autores principales: Shahzad, Muhammad, Umar, Arif Iqbal, Khan, Muazzam A., Shirazi, Syed Hamad, Khan, Zakir, Yousaf, Waqas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7201460/
https://www.ncbi.nlm.nih.gov/pubmed/32411282
http://dx.doi.org/10.1155/2020/4015323
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author Shahzad, Muhammad
Umar, Arif Iqbal
Khan, Muazzam A.
Shirazi, Syed Hamad
Khan, Zakir
Yousaf, Waqas
author_facet Shahzad, Muhammad
Umar, Arif Iqbal
Khan, Muazzam A.
Shirazi, Syed Hamad
Khan, Zakir
Yousaf, Waqas
author_sort Shahzad, Muhammad
collection PubMed
description Previous works on segmentation of SEM (scanning electron microscope) blood cell image ignore the semantic segmentation approach of whole-slide blood cell segmentation. In the proposed work, we address the problem of whole-slide blood cell segmentation using the semantic segmentation approach. We design a novel convolutional encoder-decoder framework along with VGG-16 as the pixel-level feature extraction model. The proposed framework comprises 3 main steps: First, all the original images along with manually generated ground truth masks of each blood cell type are passed through the preprocessing stage. In the preprocessing stage, pixel-level labeling, RGB to grayscale conversion of masked image and pixel fusing, and unity mask generation are performed. After that, VGG16 is loaded into the system, which acts as a pretrained pixel-level feature extraction model. In the third step, the training process is initiated on the proposed model. We have evaluated our network performance on three evaluation metrics. We obtained outstanding results with respect to classwise, as well as global and mean accuracies. Our system achieved classwise accuracies of 97.45%, 93.34%, and 85.11% for RBCs, WBCs, and platelets, respectively, while global and mean accuracies remain 97.18% and 91.96%, respectively.
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spelling pubmed-72014602020-05-14 Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Images Shahzad, Muhammad Umar, Arif Iqbal Khan, Muazzam A. Shirazi, Syed Hamad Khan, Zakir Yousaf, Waqas Comput Math Methods Med Research Article Previous works on segmentation of SEM (scanning electron microscope) blood cell image ignore the semantic segmentation approach of whole-slide blood cell segmentation. In the proposed work, we address the problem of whole-slide blood cell segmentation using the semantic segmentation approach. We design a novel convolutional encoder-decoder framework along with VGG-16 as the pixel-level feature extraction model. The proposed framework comprises 3 main steps: First, all the original images along with manually generated ground truth masks of each blood cell type are passed through the preprocessing stage. In the preprocessing stage, pixel-level labeling, RGB to grayscale conversion of masked image and pixel fusing, and unity mask generation are performed. After that, VGG16 is loaded into the system, which acts as a pretrained pixel-level feature extraction model. In the third step, the training process is initiated on the proposed model. We have evaluated our network performance on three evaluation metrics. We obtained outstanding results with respect to classwise, as well as global and mean accuracies. Our system achieved classwise accuracies of 97.45%, 93.34%, and 85.11% for RBCs, WBCs, and platelets, respectively, while global and mean accuracies remain 97.18% and 91.96%, respectively. Hindawi 2020-01-21 /pmc/articles/PMC7201460/ /pubmed/32411282 http://dx.doi.org/10.1155/2020/4015323 Text en Copyright © 2020 Muhammad Shahzad et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Shahzad, Muhammad
Umar, Arif Iqbal
Khan, Muazzam A.
Shirazi, Syed Hamad
Khan, Zakir
Yousaf, Waqas
Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Images
title Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Images
title_full Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Images
title_fullStr Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Images
title_full_unstemmed Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Images
title_short Robust Method for Semantic Segmentation of Whole-Slide Blood Cell Microscopic Images
title_sort robust method for semantic segmentation of whole-slide blood cell microscopic images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7201460/
https://www.ncbi.nlm.nih.gov/pubmed/32411282
http://dx.doi.org/10.1155/2020/4015323
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