Cargando…

The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community

The UCSF Mouse Inventory Database Application is an open-source Web App that provides information about the mutant alleles, transgenes, and inbred strains maintained by investigators at the university and facilitates sharing of these resources within the university community. The Application is desi...

Descripción completa

Detalles Bibliográficos
Autores principales: Wall, Estelle, Scoles, Jonathan, Joo, Adriane, Klein, Ophir, Quinonez, Carlo, Bush, Jeffrey O., Martin, Gail R., Laird, Diana J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Genetics Society of America 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7202022/
https://www.ncbi.nlm.nih.gov/pubmed/32152007
http://dx.doi.org/10.1534/g3.120.401086
_version_ 1783529657403965440
author Wall, Estelle
Scoles, Jonathan
Joo, Adriane
Klein, Ophir
Quinonez, Carlo
Bush, Jeffrey O.
Martin, Gail R.
Laird, Diana J.
author_facet Wall, Estelle
Scoles, Jonathan
Joo, Adriane
Klein, Ophir
Quinonez, Carlo
Bush, Jeffrey O.
Martin, Gail R.
Laird, Diana J.
author_sort Wall, Estelle
collection PubMed
description The UCSF Mouse Inventory Database Application is an open-source Web App that provides information about the mutant alleles, transgenes, and inbred strains maintained by investigators at the university and facilitates sharing of these resources within the university community. The Application is designed to promote collaboration, decrease the costs associated with obtaining genetically-modified mice, and increase access to mouse lines that are difficult to obtain. An inventory of the genetically-modified mice on campus and the investigators who maintain them is compiled from records of purchases from external sources, transfers from researchers within and outside the university, and from data provided by users. These data are verified and augmented with relevant information harvested from public databases, and stored in a succinct, searchable database secured on the university network. Here we describe this resource and provide information about how to implement and maintain such a mouse inventory database application at other institutions.
format Online
Article
Text
id pubmed-7202022
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Genetics Society of America
record_format MEDLINE/PubMed
spelling pubmed-72020222020-05-09 The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community Wall, Estelle Scoles, Jonathan Joo, Adriane Klein, Ophir Quinonez, Carlo Bush, Jeffrey O. Martin, Gail R. Laird, Diana J. G3 (Bethesda) Software and Data Resources The UCSF Mouse Inventory Database Application is an open-source Web App that provides information about the mutant alleles, transgenes, and inbred strains maintained by investigators at the university and facilitates sharing of these resources within the university community. The Application is designed to promote collaboration, decrease the costs associated with obtaining genetically-modified mice, and increase access to mouse lines that are difficult to obtain. An inventory of the genetically-modified mice on campus and the investigators who maintain them is compiled from records of purchases from external sources, transfers from researchers within and outside the university, and from data provided by users. These data are verified and augmented with relevant information harvested from public databases, and stored in a succinct, searchable database secured on the university network. Here we describe this resource and provide information about how to implement and maintain such a mouse inventory database application at other institutions. Genetics Society of America 2020-03-09 /pmc/articles/PMC7202022/ /pubmed/32152007 http://dx.doi.org/10.1534/g3.120.401086 Text en Copyright © 2020 Wall et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software and Data Resources
Wall, Estelle
Scoles, Jonathan
Joo, Adriane
Klein, Ophir
Quinonez, Carlo
Bush, Jeffrey O.
Martin, Gail R.
Laird, Diana J.
The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community
title The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community
title_full The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community
title_fullStr The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community
title_full_unstemmed The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community
title_short The UCSF Mouse Inventory Database Application, an Open Source Web App for Sharing Mutant Mice Within a Research Community
title_sort ucsf mouse inventory database application, an open source web app for sharing mutant mice within a research community
topic Software and Data Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7202022/
https://www.ncbi.nlm.nih.gov/pubmed/32152007
http://dx.doi.org/10.1534/g3.120.401086
work_keys_str_mv AT wallestelle theucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT scolesjonathan theucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT jooadriane theucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT kleinophir theucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT quinonezcarlo theucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT bushjeffreyo theucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT martingailr theucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT lairddianaj theucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT wallestelle ucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT scolesjonathan ucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT jooadriane ucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT kleinophir ucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT quinonezcarlo ucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT bushjeffreyo ucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT martingailr ucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity
AT lairddianaj ucsfmouseinventorydatabaseapplicationanopensourcewebappforsharingmutantmicewithinaresearchcommunity