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Standardised Suffixes in the Nomenclature of the Higher Taxa of Prokaryotes an Aid to Data Mining, Database Administration and Automatic Assignment of Names to Taxonomic Ranks

The formation and use of the scientific names of prokaryotes is governed by the International Code of Nomenclature of Prokaryotes. Originally deriving from the 1935 revision of the International Code of Botanical Nomenclature, it retains the treatment of scientific names as Latin words. Above the ra...

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Autor principal: Tindall, B. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7203088/
https://www.ncbi.nlm.nih.gov/pubmed/32006104
http://dx.doi.org/10.1007/s00284-020-01890-y
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author Tindall, B. J.
author_facet Tindall, B. J.
author_sort Tindall, B. J.
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description The formation and use of the scientific names of prokaryotes is governed by the International Code of Nomenclature of Prokaryotes. Originally deriving from the 1935 revision of the International Code of Botanical Nomenclature, it retains the treatment of scientific names as Latin words. Above the rank of genus the rank is generally denoted by a single, standardised suffix. This has great advantage in text mining and database infrastructure where the identification of the standardised suffix can automatically be linked to the rank at which the scientific name is being used. The only exception at present are names at the rank of class where, although a standardised suffix has been proposed (-ia) it does not allow one to unambiguously identify the rank of the scientific name, since it is also a suffix used at the rank of genus. In addition, due to the fact that the suffix at the rank of class was not regulated in earlier versions of the International Code of Nomenclature of Bacteria, there are names that do not follow the standardised suffix. Uniformity would be an advantage. The problem and a proposed solution are discussed.
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spelling pubmed-72030882020-05-07 Standardised Suffixes in the Nomenclature of the Higher Taxa of Prokaryotes an Aid to Data Mining, Database Administration and Automatic Assignment of Names to Taxonomic Ranks Tindall, B. J. Curr Microbiol Article The formation and use of the scientific names of prokaryotes is governed by the International Code of Nomenclature of Prokaryotes. Originally deriving from the 1935 revision of the International Code of Botanical Nomenclature, it retains the treatment of scientific names as Latin words. Above the rank of genus the rank is generally denoted by a single, standardised suffix. This has great advantage in text mining and database infrastructure where the identification of the standardised suffix can automatically be linked to the rank at which the scientific name is being used. The only exception at present are names at the rank of class where, although a standardised suffix has been proposed (-ia) it does not allow one to unambiguously identify the rank of the scientific name, since it is also a suffix used at the rank of genus. In addition, due to the fact that the suffix at the rank of class was not regulated in earlier versions of the International Code of Nomenclature of Bacteria, there are names that do not follow the standardised suffix. Uniformity would be an advantage. The problem and a proposed solution are discussed. Springer US 2020-01-31 2020 /pmc/articles/PMC7203088/ /pubmed/32006104 http://dx.doi.org/10.1007/s00284-020-01890-y Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Tindall, B. J.
Standardised Suffixes in the Nomenclature of the Higher Taxa of Prokaryotes an Aid to Data Mining, Database Administration and Automatic Assignment of Names to Taxonomic Ranks
title Standardised Suffixes in the Nomenclature of the Higher Taxa of Prokaryotes an Aid to Data Mining, Database Administration and Automatic Assignment of Names to Taxonomic Ranks
title_full Standardised Suffixes in the Nomenclature of the Higher Taxa of Prokaryotes an Aid to Data Mining, Database Administration and Automatic Assignment of Names to Taxonomic Ranks
title_fullStr Standardised Suffixes in the Nomenclature of the Higher Taxa of Prokaryotes an Aid to Data Mining, Database Administration and Automatic Assignment of Names to Taxonomic Ranks
title_full_unstemmed Standardised Suffixes in the Nomenclature of the Higher Taxa of Prokaryotes an Aid to Data Mining, Database Administration and Automatic Assignment of Names to Taxonomic Ranks
title_short Standardised Suffixes in the Nomenclature of the Higher Taxa of Prokaryotes an Aid to Data Mining, Database Administration and Automatic Assignment of Names to Taxonomic Ranks
title_sort standardised suffixes in the nomenclature of the higher taxa of prokaryotes an aid to data mining, database administration and automatic assignment of names to taxonomic ranks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7203088/
https://www.ncbi.nlm.nih.gov/pubmed/32006104
http://dx.doi.org/10.1007/s00284-020-01890-y
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