Cargando…
3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images
SUMMARY: Segmentation of single cells in microscopy images is one of the major challenges in computational biology. It is the first step of most bioimage analysis tasks, and essential to create training sets for more advanced deep learning approaches. Here, we propose 3D-Cell-Annotator to solve this...
Autores principales: | Tasnadi, Ervin A, Toth, Timea, Kovacs, Maria, Diosdi, Akos, Pampaloni, Francesco, Molnar, Jozsef, Piccinini, Filippo, Horvath, Peter |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7203751/ https://www.ncbi.nlm.nih.gov/pubmed/31950986 http://dx.doi.org/10.1093/bioinformatics/btaa029 |
Ejemplares similares
-
Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates
por: Piccinini, Filippo, et al.
Publicado: (2020) -
Cell lines and clearing approaches: a single-cell level 3D light-sheet fluorescence microscopy dataset of multicellular spheroids
por: Diosdi, Akos, et al.
Publicado: (2021) -
A quantitative metric for the comparative evaluation of optical clearing protocols for 3D multicellular spheroids
por: Diosdi, Akos, et al.
Publicado: (2021) -
MiCellAnnGELo: annotate microscopy time series of complex cell surfaces with 3D virtual reality
por: Platt, Adam, et al.
Publicado: (2023) -
AnnotatorJ: an ImageJ plugin to ease hand annotation of cellular compartments
por: Hollandi, Réka, et al.
Publicado: (2020)