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Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity?
BACKGROUND: Most structured clinical data, such as diagnosis codes, are not sufficient to obtain precise phenotypes and assess disease burden. Text mining of clinical notes could provide a basis for detailed profiles of phenotypic traits. The objective of the current study was to determine whether d...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7204249/ https://www.ncbi.nlm.nih.gov/pubmed/32381026 http://dx.doi.org/10.1186/s12874-020-00993-1 |
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author | Sørup, Freja Karuna Hemmingsen Brunak, Søren Eriksson, Robert |
author_facet | Sørup, Freja Karuna Hemmingsen Brunak, Søren Eriksson, Robert |
author_sort | Sørup, Freja Karuna Hemmingsen |
collection | PubMed |
description | BACKGROUND: Most structured clinical data, such as diagnosis codes, are not sufficient to obtain precise phenotypes and assess disease burden. Text mining of clinical notes could provide a basis for detailed profiles of phenotypic traits. The objective of the current study was to determine whether drug dose, regardless of polypharmacy, is associated with the length of clinical notes, and to determine the frequency of adverse events per word in clinical notes. METHODS: In this observational study, we utilized restricted-access data from an electronic patient record system. Using three methods (defined daily dose, olanzapine equivalents, and chlorpromazine equivalents) we calculated antipsychotic dose equivalents and compared these with the number of words recorded per treatment day. For each normalization method, the frequencies of adverse events per word in manually curated samples were compared to dose intervals. RESULTS: The length of clinical notes per treatment day was positively associated with the prescribed dose for all normalization methods. The number of adverse events per word was stable over the analyzed dose spectrum. CONCLUSIONS: Assuming that drug dose increases with the severity of disease, the length of clinical notes can serve as a proxy for disease severity. Due to the near-linear relationship, correction of daily word count is unnecessary when text mining for potential adverse drug reactions. |
format | Online Article Text |
id | pubmed-7204249 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-72042492020-05-12 Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity? Sørup, Freja Karuna Hemmingsen Brunak, Søren Eriksson, Robert BMC Med Res Methodol Research Article BACKGROUND: Most structured clinical data, such as diagnosis codes, are not sufficient to obtain precise phenotypes and assess disease burden. Text mining of clinical notes could provide a basis for detailed profiles of phenotypic traits. The objective of the current study was to determine whether drug dose, regardless of polypharmacy, is associated with the length of clinical notes, and to determine the frequency of adverse events per word in clinical notes. METHODS: In this observational study, we utilized restricted-access data from an electronic patient record system. Using three methods (defined daily dose, olanzapine equivalents, and chlorpromazine equivalents) we calculated antipsychotic dose equivalents and compared these with the number of words recorded per treatment day. For each normalization method, the frequencies of adverse events per word in manually curated samples were compared to dose intervals. RESULTS: The length of clinical notes per treatment day was positively associated with the prescribed dose for all normalization methods. The number of adverse events per word was stable over the analyzed dose spectrum. CONCLUSIONS: Assuming that drug dose increases with the severity of disease, the length of clinical notes can serve as a proxy for disease severity. Due to the near-linear relationship, correction of daily word count is unnecessary when text mining for potential adverse drug reactions. BioMed Central 2020-05-07 /pmc/articles/PMC7204249/ /pubmed/32381026 http://dx.doi.org/10.1186/s12874-020-00993-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Sørup, Freja Karuna Hemmingsen Brunak, Søren Eriksson, Robert Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity? |
title | Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity? |
title_full | Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity? |
title_fullStr | Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity? |
title_full_unstemmed | Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity? |
title_short | Association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity? |
title_sort | association between antipsychotic drug dose and length of clinical notes: a proxy of disease severity? |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7204249/ https://www.ncbi.nlm.nih.gov/pubmed/32381026 http://dx.doi.org/10.1186/s12874-020-00993-1 |
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