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A Bayesian unified framework for risk estimation and cluster identification in small area health data analysis
Many statistical models have been proposed to analyse small area disease data with the aim of describing spatial variation in disease risk. In this paper, we propose a Bayesian hierarchical model that simultaneously allows for risk estimation and cluster identification. Our model formulation assumes...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7205265/ https://www.ncbi.nlm.nih.gov/pubmed/32379767 http://dx.doi.org/10.1371/journal.pone.0231935 |
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author | Flórez, K. C. Corberán-Vallet, A. Iftimi, A. Bermúdez, J. D. |
author_facet | Flórez, K. C. Corberán-Vallet, A. Iftimi, A. Bermúdez, J. D. |
author_sort | Flórez, K. C. |
collection | PubMed |
description | Many statistical models have been proposed to analyse small area disease data with the aim of describing spatial variation in disease risk. In this paper, we propose a Bayesian hierarchical model that simultaneously allows for risk estimation and cluster identification. Our model formulation assumes that there is an unknown number of risk classes and small areas are assigned to a risk class by means of independent allocation variables. Therefore, areas within each cluster are assumed to share a common risk but they may be geographically separated. The posterior distribution of the parameter representing the number of risk classes is estimated using a novel procedure that combines its prior distribution with an efficient estimate of the marginal likelihood of the data given this parameter. An extension of the model incorporating covariates is also shown. These covariates may incorporate additional information on the problem or they may account for spatial correlation in the data. We illustrate the performance of the proposed model through both a simulation study and a case study of reported cases of varicella in the city of Valencia, Spain. |
format | Online Article Text |
id | pubmed-7205265 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-72052652020-05-12 A Bayesian unified framework for risk estimation and cluster identification in small area health data analysis Flórez, K. C. Corberán-Vallet, A. Iftimi, A. Bermúdez, J. D. PLoS One Research Article Many statistical models have been proposed to analyse small area disease data with the aim of describing spatial variation in disease risk. In this paper, we propose a Bayesian hierarchical model that simultaneously allows for risk estimation and cluster identification. Our model formulation assumes that there is an unknown number of risk classes and small areas are assigned to a risk class by means of independent allocation variables. Therefore, areas within each cluster are assumed to share a common risk but they may be geographically separated. The posterior distribution of the parameter representing the number of risk classes is estimated using a novel procedure that combines its prior distribution with an efficient estimate of the marginal likelihood of the data given this parameter. An extension of the model incorporating covariates is also shown. These covariates may incorporate additional information on the problem or they may account for spatial correlation in the data. We illustrate the performance of the proposed model through both a simulation study and a case study of reported cases of varicella in the city of Valencia, Spain. Public Library of Science 2020-05-07 /pmc/articles/PMC7205265/ /pubmed/32379767 http://dx.doi.org/10.1371/journal.pone.0231935 Text en © 2020 Flórez et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Flórez, K. C. Corberán-Vallet, A. Iftimi, A. Bermúdez, J. D. A Bayesian unified framework for risk estimation and cluster identification in small area health data analysis |
title | A Bayesian unified framework for risk estimation and cluster identification in small area health data analysis |
title_full | A Bayesian unified framework for risk estimation and cluster identification in small area health data analysis |
title_fullStr | A Bayesian unified framework for risk estimation and cluster identification in small area health data analysis |
title_full_unstemmed | A Bayesian unified framework for risk estimation and cluster identification in small area health data analysis |
title_short | A Bayesian unified framework for risk estimation and cluster identification in small area health data analysis |
title_sort | bayesian unified framework for risk estimation and cluster identification in small area health data analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7205265/ https://www.ncbi.nlm.nih.gov/pubmed/32379767 http://dx.doi.org/10.1371/journal.pone.0231935 |
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