Cargando…
Evaluating Computational Shortcuts in Supercell-Based Phonon Calculations of Molecular Crystals: The Instructive Case of Naphthalene
[Image: see text] Phonons crucially impact a variety of properties of organic semiconductor materials. For instance, charge- and heat transport depend on low-frequency phonons, while for other properties, such as the free energy, especially high-frequency phonons count. For all these quantities one...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2020
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7205391/ https://www.ncbi.nlm.nih.gov/pubmed/32155063 http://dx.doi.org/10.1021/acs.jctc.0c00119 |
_version_ | 1783530235850915840 |
---|---|
author | Kamencek, Tomas Wieser, Sandro Kojima, Hirotaka Bedoya-Martínez, Natalia Dürholt, Johannes P. Schmid, Rochus Zojer, Egbert |
author_facet | Kamencek, Tomas Wieser, Sandro Kojima, Hirotaka Bedoya-Martínez, Natalia Dürholt, Johannes P. Schmid, Rochus Zojer, Egbert |
author_sort | Kamencek, Tomas |
collection | PubMed |
description | [Image: see text] Phonons crucially impact a variety of properties of organic semiconductor materials. For instance, charge- and heat transport depend on low-frequency phonons, while for other properties, such as the free energy, especially high-frequency phonons count. For all these quantities one needs to know the entire phonon band structure, whose simulation becomes exceedingly expensive for more complex systems when using methods like dispersion-corrected density functional theory (DFT). Therefore, in the present contribution we evaluate the performance of more approximate methodologies, including density functional tight binding (DFTB) and a pool of force fields (FF) of varying complexity and sophistication. Beyond merely comparing phonon band structures, we also critically evaluate to what extent derived quantities, like temperature-dependent heat capacities, mean squared thermal displacements, and temperature-dependent free energies are impacted by shortcomings in the description of the phonon bands. As a benchmark system, we choose (deuterated) naphthalene, as the only organic semiconductor material for which to date experimental phonon band structures are available in the literature. Overall, the best performance among the approximate methodologies is observed for a system-specifically parametrized second-generation force field. Interestingly, in the low-frequency regime also force fields with a rather simplistic model for the bonding interactions (like the General Amber Force Field) perform rather well. As far as the tested DFTB parametrization is concerned, we obtain a significant underestimation of the unit-cell volume resulting in a pronounced overestimation of the phonon energies in the low-frequency region. This cannot be mended by relying on the DFT-calculated unit cell, since with this unit cell the DFTB phonon frequencies significantly underestimate the experiments. |
format | Online Article Text |
id | pubmed-7205391 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-72053912020-05-08 Evaluating Computational Shortcuts in Supercell-Based Phonon Calculations of Molecular Crystals: The Instructive Case of Naphthalene Kamencek, Tomas Wieser, Sandro Kojima, Hirotaka Bedoya-Martínez, Natalia Dürholt, Johannes P. Schmid, Rochus Zojer, Egbert J Chem Theory Comput [Image: see text] Phonons crucially impact a variety of properties of organic semiconductor materials. For instance, charge- and heat transport depend on low-frequency phonons, while for other properties, such as the free energy, especially high-frequency phonons count. For all these quantities one needs to know the entire phonon band structure, whose simulation becomes exceedingly expensive for more complex systems when using methods like dispersion-corrected density functional theory (DFT). Therefore, in the present contribution we evaluate the performance of more approximate methodologies, including density functional tight binding (DFTB) and a pool of force fields (FF) of varying complexity and sophistication. Beyond merely comparing phonon band structures, we also critically evaluate to what extent derived quantities, like temperature-dependent heat capacities, mean squared thermal displacements, and temperature-dependent free energies are impacted by shortcomings in the description of the phonon bands. As a benchmark system, we choose (deuterated) naphthalene, as the only organic semiconductor material for which to date experimental phonon band structures are available in the literature. Overall, the best performance among the approximate methodologies is observed for a system-specifically parametrized second-generation force field. Interestingly, in the low-frequency regime also force fields with a rather simplistic model for the bonding interactions (like the General Amber Force Field) perform rather well. As far as the tested DFTB parametrization is concerned, we obtain a significant underestimation of the unit-cell volume resulting in a pronounced overestimation of the phonon energies in the low-frequency region. This cannot be mended by relying on the DFT-calculated unit cell, since with this unit cell the DFTB phonon frequencies significantly underestimate the experiments. American Chemical Society 2020-03-10 2020-04-14 /pmc/articles/PMC7205391/ /pubmed/32155063 http://dx.doi.org/10.1021/acs.jctc.0c00119 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Kamencek, Tomas Wieser, Sandro Kojima, Hirotaka Bedoya-Martínez, Natalia Dürholt, Johannes P. Schmid, Rochus Zojer, Egbert Evaluating Computational Shortcuts in Supercell-Based Phonon Calculations of Molecular Crystals: The Instructive Case of Naphthalene |
title | Evaluating Computational Shortcuts in Supercell-Based
Phonon Calculations of Molecular Crystals: The Instructive Case of
Naphthalene |
title_full | Evaluating Computational Shortcuts in Supercell-Based
Phonon Calculations of Molecular Crystals: The Instructive Case of
Naphthalene |
title_fullStr | Evaluating Computational Shortcuts in Supercell-Based
Phonon Calculations of Molecular Crystals: The Instructive Case of
Naphthalene |
title_full_unstemmed | Evaluating Computational Shortcuts in Supercell-Based
Phonon Calculations of Molecular Crystals: The Instructive Case of
Naphthalene |
title_short | Evaluating Computational Shortcuts in Supercell-Based
Phonon Calculations of Molecular Crystals: The Instructive Case of
Naphthalene |
title_sort | evaluating computational shortcuts in supercell-based
phonon calculations of molecular crystals: the instructive case of
naphthalene |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7205391/ https://www.ncbi.nlm.nih.gov/pubmed/32155063 http://dx.doi.org/10.1021/acs.jctc.0c00119 |
work_keys_str_mv | AT kamencektomas evaluatingcomputationalshortcutsinsupercellbasedphononcalculationsofmolecularcrystalstheinstructivecaseofnaphthalene AT wiesersandro evaluatingcomputationalshortcutsinsupercellbasedphononcalculationsofmolecularcrystalstheinstructivecaseofnaphthalene AT kojimahirotaka evaluatingcomputationalshortcutsinsupercellbasedphononcalculationsofmolecularcrystalstheinstructivecaseofnaphthalene AT bedoyamartineznatalia evaluatingcomputationalshortcutsinsupercellbasedphononcalculationsofmolecularcrystalstheinstructivecaseofnaphthalene AT durholtjohannesp evaluatingcomputationalshortcutsinsupercellbasedphononcalculationsofmolecularcrystalstheinstructivecaseofnaphthalene AT schmidrochus evaluatingcomputationalshortcutsinsupercellbasedphononcalculationsofmolecularcrystalstheinstructivecaseofnaphthalene AT zojeregbert evaluatingcomputationalshortcutsinsupercellbasedphononcalculationsofmolecularcrystalstheinstructivecaseofnaphthalene |