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Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors

We present a deep learning-based framework to design and quantify point-of-care sensors. As a use-case, we demonstrated a low-cost and rapid paper-based vertical flow assay (VFA) for high sensitivity C-Reactive Protein (hsCRP) testing, commonly used for assessing risk of cardio-vascular disease (CVD...

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Autores principales: Ballard, Zachary S., Joung, Hyou-Arm, Goncharov, Artem, Liang, Jesse, Nugroho, Karina, Di Carlo, Dino, Garner, Omai B., Ozcan, Aydogan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7206101/
https://www.ncbi.nlm.nih.gov/pubmed/32411827
http://dx.doi.org/10.1038/s41746-020-0274-y
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author Ballard, Zachary S.
Joung, Hyou-Arm
Goncharov, Artem
Liang, Jesse
Nugroho, Karina
Di Carlo, Dino
Garner, Omai B.
Ozcan, Aydogan
author_facet Ballard, Zachary S.
Joung, Hyou-Arm
Goncharov, Artem
Liang, Jesse
Nugroho, Karina
Di Carlo, Dino
Garner, Omai B.
Ozcan, Aydogan
author_sort Ballard, Zachary S.
collection PubMed
description We present a deep learning-based framework to design and quantify point-of-care sensors. As a use-case, we demonstrated a low-cost and rapid paper-based vertical flow assay (VFA) for high sensitivity C-Reactive Protein (hsCRP) testing, commonly used for assessing risk of cardio-vascular disease (CVD). A machine learning-based framework was developed to (1) determine an optimal configuration of immunoreaction spots and conditions, spatially-multiplexed on a sensing membrane, and (2) to accurately infer target analyte concentration. Using a custom-designed handheld VFA reader, a clinical study with 85 human samples showed a competitive coefficient-of-variation of 11.2% and linearity of R(2) = 0.95 among blindly-tested VFAs in the hsCRP range (i.e., 0–10 mg/L). We also demonstrated a mitigation of the hook-effect due to the multiplexed immunoreactions on the sensing membrane. This paper-based computational VFA could expand access to CVD testing, and the presented framework can be broadly used to design cost-effective and mobile point-of-care sensors.
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spelling pubmed-72061012020-05-14 Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors Ballard, Zachary S. Joung, Hyou-Arm Goncharov, Artem Liang, Jesse Nugroho, Karina Di Carlo, Dino Garner, Omai B. Ozcan, Aydogan NPJ Digit Med Article We present a deep learning-based framework to design and quantify point-of-care sensors. As a use-case, we demonstrated a low-cost and rapid paper-based vertical flow assay (VFA) for high sensitivity C-Reactive Protein (hsCRP) testing, commonly used for assessing risk of cardio-vascular disease (CVD). A machine learning-based framework was developed to (1) determine an optimal configuration of immunoreaction spots and conditions, spatially-multiplexed on a sensing membrane, and (2) to accurately infer target analyte concentration. Using a custom-designed handheld VFA reader, a clinical study with 85 human samples showed a competitive coefficient-of-variation of 11.2% and linearity of R(2) = 0.95 among blindly-tested VFAs in the hsCRP range (i.e., 0–10 mg/L). We also demonstrated a mitigation of the hook-effect due to the multiplexed immunoreactions on the sensing membrane. This paper-based computational VFA could expand access to CVD testing, and the presented framework can be broadly used to design cost-effective and mobile point-of-care sensors. Nature Publishing Group UK 2020-05-07 /pmc/articles/PMC7206101/ /pubmed/32411827 http://dx.doi.org/10.1038/s41746-020-0274-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ballard, Zachary S.
Joung, Hyou-Arm
Goncharov, Artem
Liang, Jesse
Nugroho, Karina
Di Carlo, Dino
Garner, Omai B.
Ozcan, Aydogan
Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors
title Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors
title_full Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors
title_fullStr Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors
title_full_unstemmed Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors
title_short Deep learning-enabled point-of-care sensing using multiplexed paper-based sensors
title_sort deep learning-enabled point-of-care sensing using multiplexed paper-based sensors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7206101/
https://www.ncbi.nlm.nih.gov/pubmed/32411827
http://dx.doi.org/10.1038/s41746-020-0274-y
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