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Raman Spectroscopy Enables Non-Invasive Identification of Peanut Genotypes and Value-Added Traits

Identification of specific genotypes can be accomplished by visual recognition of their distinct phenotypical appearance, as well as DNA analysis. Visual identification (ID) of species is subjective and usually requires substantial taxonomic expertise. Genotyping and sequencing are destructive, time...

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Autores principales: Farber, Charles, Sanchez, Lee, Rizevsky, Stanislav, Ermolenkov, Alexei, McCutchen, Bill, Cason, John, Simpson, Charles, Burow, Mark, Kurouski, Dmitry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7206150/
https://www.ncbi.nlm.nih.gov/pubmed/32382086
http://dx.doi.org/10.1038/s41598-020-64730-w
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author Farber, Charles
Sanchez, Lee
Rizevsky, Stanislav
Ermolenkov, Alexei
McCutchen, Bill
Cason, John
Simpson, Charles
Burow, Mark
Kurouski, Dmitry
author_facet Farber, Charles
Sanchez, Lee
Rizevsky, Stanislav
Ermolenkov, Alexei
McCutchen, Bill
Cason, John
Simpson, Charles
Burow, Mark
Kurouski, Dmitry
author_sort Farber, Charles
collection PubMed
description Identification of specific genotypes can be accomplished by visual recognition of their distinct phenotypical appearance, as well as DNA analysis. Visual identification (ID) of species is subjective and usually requires substantial taxonomic expertise. Genotyping and sequencing are destructive, time- and labor-consuming. In this study, we investigate the potential use of Raman spectroscopy (RS) as a label-free, non-invasive and non-destructive analytical technique for the fast and accurate identification of peanut genotypes. We show that chemometric analysis of peanut leaflet spectra provides accurate identification of different varieties. This same analysis can be used for prediction of nematode resistance and oleic-linoleic oil (O/L) ratio. Raman-based analysis of seeds provides accurate genotype identification in 95% of samples. Additionally, we present data on the identification of carbohydrates, proteins, fiber and other nutrients obtained from spectroscopic signatures of peanut seeds. These results demonstrate that RS allows for fast, accurate and non-invasive screening and selection of plants which can be used for precision breeding.
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spelling pubmed-72061502020-05-15 Raman Spectroscopy Enables Non-Invasive Identification of Peanut Genotypes and Value-Added Traits Farber, Charles Sanchez, Lee Rizevsky, Stanislav Ermolenkov, Alexei McCutchen, Bill Cason, John Simpson, Charles Burow, Mark Kurouski, Dmitry Sci Rep Article Identification of specific genotypes can be accomplished by visual recognition of their distinct phenotypical appearance, as well as DNA analysis. Visual identification (ID) of species is subjective and usually requires substantial taxonomic expertise. Genotyping and sequencing are destructive, time- and labor-consuming. In this study, we investigate the potential use of Raman spectroscopy (RS) as a label-free, non-invasive and non-destructive analytical technique for the fast and accurate identification of peanut genotypes. We show that chemometric analysis of peanut leaflet spectra provides accurate identification of different varieties. This same analysis can be used for prediction of nematode resistance and oleic-linoleic oil (O/L) ratio. Raman-based analysis of seeds provides accurate genotype identification in 95% of samples. Additionally, we present data on the identification of carbohydrates, proteins, fiber and other nutrients obtained from spectroscopic signatures of peanut seeds. These results demonstrate that RS allows for fast, accurate and non-invasive screening and selection of plants which can be used for precision breeding. Nature Publishing Group UK 2020-05-07 /pmc/articles/PMC7206150/ /pubmed/32382086 http://dx.doi.org/10.1038/s41598-020-64730-w Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Farber, Charles
Sanchez, Lee
Rizevsky, Stanislav
Ermolenkov, Alexei
McCutchen, Bill
Cason, John
Simpson, Charles
Burow, Mark
Kurouski, Dmitry
Raman Spectroscopy Enables Non-Invasive Identification of Peanut Genotypes and Value-Added Traits
title Raman Spectroscopy Enables Non-Invasive Identification of Peanut Genotypes and Value-Added Traits
title_full Raman Spectroscopy Enables Non-Invasive Identification of Peanut Genotypes and Value-Added Traits
title_fullStr Raman Spectroscopy Enables Non-Invasive Identification of Peanut Genotypes and Value-Added Traits
title_full_unstemmed Raman Spectroscopy Enables Non-Invasive Identification of Peanut Genotypes and Value-Added Traits
title_short Raman Spectroscopy Enables Non-Invasive Identification of Peanut Genotypes and Value-Added Traits
title_sort raman spectroscopy enables non-invasive identification of peanut genotypes and value-added traits
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7206150/
https://www.ncbi.nlm.nih.gov/pubmed/32382086
http://dx.doi.org/10.1038/s41598-020-64730-w
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