Cargando…

Correlation Matters: Multi-scale Fine-Grained Contextual Information Extraction for Hepatic Tumor Segmentation

Automatic tumor segmentation has been used as a diagnostic aid in the identification of diseases such as tumors from liver CT scans, and their treatment. Owing to their success in computer vision tasks, the state-of-the-art Fully Convolutional Networks (FCNs) or U-Net based models have often been em...

Descripción completa

Detalles Bibliográficos
Autores principales: Pang, Shuchao, Du, Anan, Yu, Zhenmei, Orgun, Mehmet A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7206311/
http://dx.doi.org/10.1007/978-3-030-47426-3_36
_version_ 1783530392007999488
author Pang, Shuchao
Du, Anan
Yu, Zhenmei
Orgun, Mehmet A.
author_facet Pang, Shuchao
Du, Anan
Yu, Zhenmei
Orgun, Mehmet A.
author_sort Pang, Shuchao
collection PubMed
description Automatic tumor segmentation has been used as a diagnostic aid in the identification of diseases such as tumors from liver CT scans, and their treatment. Owing to their success in computer vision tasks, the state-of-the-art Fully Convolutional Networks (FCNs) or U-Net based models have often been employed in many recent studies for automatic tumor segmentation to learn numerous weight-shared convolutional kernels and extract various semantic features. However, the correlation between different tumor regions in feature maps cannot be easily captured due to the lack of contextual dependencies, which in turn limits the representative capability of the adopted models and thus affects the accuracy of tumor segmentation results. To resolve this issue, we propose a novel framework for segmentation of tumors in liver CT scans, which can explicitly extract multi-scale fine-grained contextual information by adaptively aggregating local features with their global dependencies. The proposed multi-scale framework features a light model with a very few additional parameters, and also its visualization capability significantly boosts networks’ interpretability. Experimental results on a real-world liver tumor CT dataset illustrate that the proposed framework achieves the state-of-the-art performance in terms of a number of widely used evaluation criteria for the hepatic tumor segmentation task.
format Online
Article
Text
id pubmed-7206311
institution National Center for Biotechnology Information
language English
publishDate 2020
record_format MEDLINE/PubMed
spelling pubmed-72063112020-05-08 Correlation Matters: Multi-scale Fine-Grained Contextual Information Extraction for Hepatic Tumor Segmentation Pang, Shuchao Du, Anan Yu, Zhenmei Orgun, Mehmet A. Advances in Knowledge Discovery and Data Mining Article Automatic tumor segmentation has been used as a diagnostic aid in the identification of diseases such as tumors from liver CT scans, and their treatment. Owing to their success in computer vision tasks, the state-of-the-art Fully Convolutional Networks (FCNs) or U-Net based models have often been employed in many recent studies for automatic tumor segmentation to learn numerous weight-shared convolutional kernels and extract various semantic features. However, the correlation between different tumor regions in feature maps cannot be easily captured due to the lack of contextual dependencies, which in turn limits the representative capability of the adopted models and thus affects the accuracy of tumor segmentation results. To resolve this issue, we propose a novel framework for segmentation of tumors in liver CT scans, which can explicitly extract multi-scale fine-grained contextual information by adaptively aggregating local features with their global dependencies. The proposed multi-scale framework features a light model with a very few additional parameters, and also its visualization capability significantly boosts networks’ interpretability. Experimental results on a real-world liver tumor CT dataset illustrate that the proposed framework achieves the state-of-the-art performance in terms of a number of widely used evaluation criteria for the hepatic tumor segmentation task. 2020-04-17 /pmc/articles/PMC7206311/ http://dx.doi.org/10.1007/978-3-030-47426-3_36 Text en © Springer Nature Switzerland AG 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Pang, Shuchao
Du, Anan
Yu, Zhenmei
Orgun, Mehmet A.
Correlation Matters: Multi-scale Fine-Grained Contextual Information Extraction for Hepatic Tumor Segmentation
title Correlation Matters: Multi-scale Fine-Grained Contextual Information Extraction for Hepatic Tumor Segmentation
title_full Correlation Matters: Multi-scale Fine-Grained Contextual Information Extraction for Hepatic Tumor Segmentation
title_fullStr Correlation Matters: Multi-scale Fine-Grained Contextual Information Extraction for Hepatic Tumor Segmentation
title_full_unstemmed Correlation Matters: Multi-scale Fine-Grained Contextual Information Extraction for Hepatic Tumor Segmentation
title_short Correlation Matters: Multi-scale Fine-Grained Contextual Information Extraction for Hepatic Tumor Segmentation
title_sort correlation matters: multi-scale fine-grained contextual information extraction for hepatic tumor segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7206311/
http://dx.doi.org/10.1007/978-3-030-47426-3_36
work_keys_str_mv AT pangshuchao correlationmattersmultiscalefinegrainedcontextualinformationextractionforhepatictumorsegmentation
AT duanan correlationmattersmultiscalefinegrainedcontextualinformationextractionforhepatictumorsegmentation
AT yuzhenmei correlationmattersmultiscalefinegrainedcontextualinformationextractionforhepatictumorsegmentation
AT orgunmehmeta correlationmattersmultiscalefinegrainedcontextualinformationextractionforhepatictumorsegmentation