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Biopanning data bank 2018: hugging next generation phage display

The 2018 update of the biopanning data bank (BDB) stores phage display data sequenced by Sanger sequencing and next generation sequencing technologies. In this work, we upgraded the database with more biopanning data sets and several new features, including (i) incorporation of next generation biopa...

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Detalles Bibliográficos
Autores principales: He, Bifang, Jiang, Lixu, Duan, Yaocong, Chai, Guoshi, Fang, Yewei, Kang, Juanjuan, Yu, Min, Li, Ning, Tang, Zhongjie, Yao, Pengcheng, Wu, Pengcheng, Derda, Ratmir, Huang, Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7206649/
https://www.ncbi.nlm.nih.gov/pubmed/29688378
http://dx.doi.org/10.1093/database/bay032
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author He, Bifang
Jiang, Lixu
Duan, Yaocong
Chai, Guoshi
Fang, Yewei
Kang, Juanjuan
Yu, Min
Li, Ning
Tang, Zhongjie
Yao, Pengcheng
Wu, Pengcheng
Derda, Ratmir
Huang, Jian
author_facet He, Bifang
Jiang, Lixu
Duan, Yaocong
Chai, Guoshi
Fang, Yewei
Kang, Juanjuan
Yu, Min
Li, Ning
Tang, Zhongjie
Yao, Pengcheng
Wu, Pengcheng
Derda, Ratmir
Huang, Jian
author_sort He, Bifang
collection PubMed
description The 2018 update of the biopanning data bank (BDB) stores phage display data sequenced by Sanger sequencing and next generation sequencing technologies. In this work, we upgraded the database with more biopanning data sets and several new features, including (i) incorporation of next generation biopanning data and the unselected population where the target is not determined and the round of screening is zero; (ii) addition of sequencing information; (iii) improvement of browsing and searching systems and 3 D chemical structure viewer; (iv) integration of standalone tools for target-unrelated peptides analysis within conventional phage display and next generation phage display (NGPD) data. In the current version of BDB (released on 19 January 2018), the database houses 3291 sets of biopanning data collected from 1540 published articles, including 95 NGPD data sets and 3196 traditional biopanning data sets. The BDB database serves as an important and comprehensive resource for developing peptide ligands. Database URL: The BDB database is available at http://immunet.cn/bdb
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spelling pubmed-72066492020-05-13 Biopanning data bank 2018: hugging next generation phage display He, Bifang Jiang, Lixu Duan, Yaocong Chai, Guoshi Fang, Yewei Kang, Juanjuan Yu, Min Li, Ning Tang, Zhongjie Yao, Pengcheng Wu, Pengcheng Derda, Ratmir Huang, Jian Database (Oxford) Database Update The 2018 update of the biopanning data bank (BDB) stores phage display data sequenced by Sanger sequencing and next generation sequencing technologies. In this work, we upgraded the database with more biopanning data sets and several new features, including (i) incorporation of next generation biopanning data and the unselected population where the target is not determined and the round of screening is zero; (ii) addition of sequencing information; (iii) improvement of browsing and searching systems and 3 D chemical structure viewer; (iv) integration of standalone tools for target-unrelated peptides analysis within conventional phage display and next generation phage display (NGPD) data. In the current version of BDB (released on 19 January 2018), the database houses 3291 sets of biopanning data collected from 1540 published articles, including 95 NGPD data sets and 3196 traditional biopanning data sets. The BDB database serves as an important and comprehensive resource for developing peptide ligands. Database URL: The BDB database is available at http://immunet.cn/bdb Oxford University Press 2018-03-27 /pmc/articles/PMC7206649/ /pubmed/29688378 http://dx.doi.org/10.1093/database/bay032 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Update
He, Bifang
Jiang, Lixu
Duan, Yaocong
Chai, Guoshi
Fang, Yewei
Kang, Juanjuan
Yu, Min
Li, Ning
Tang, Zhongjie
Yao, Pengcheng
Wu, Pengcheng
Derda, Ratmir
Huang, Jian
Biopanning data bank 2018: hugging next generation phage display
title Biopanning data bank 2018: hugging next generation phage display
title_full Biopanning data bank 2018: hugging next generation phage display
title_fullStr Biopanning data bank 2018: hugging next generation phage display
title_full_unstemmed Biopanning data bank 2018: hugging next generation phage display
title_short Biopanning data bank 2018: hugging next generation phage display
title_sort biopanning data bank 2018: hugging next generation phage display
topic Database Update
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7206649/
https://www.ncbi.nlm.nih.gov/pubmed/29688378
http://dx.doi.org/10.1093/database/bay032
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